Package: tophat Version: 2.0.0-1 Severity: grave Hi all,
/usr/bin/tophat2 is a shell script (#!/bin/sh), but uses command(s?) available only with bash. $ tophat2 /usr/bin/tophat2: 13: [[: not found This is probably easy to solve, but I did not have time to choose which is the most ecosystem-friendly solution. Cheers, -- Charles -- System Information: Debian Release: wheezy/sid APT prefers stable APT policy: (910, 'stable'), (900, 'testing'), (800, 'unstable'), (500, 'stable-updates'), (1, 'experimental') Architecture: amd64 (x86_64) Kernel: Linux 2.6.39-bpo.2-amd64 (SMP w/8 CPU cores) Locale: LANG=en_GB.utf8, LC_CTYPE=en_GB.utf8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/dash Versions of packages tophat depends on: ii bowtie2 2.0.0-beta5-1 ultrafast memory-efficient short r ii dpkg 1.16.0.3 Debian package management system ii libboost-thread1.49.0 1.49.0-2 portable C++ multi-threading ii libc6 2.13-21 Embedded GNU C Library: Shared lib ii libgcc1 1:4.7.0-6 GCC support library ii libstdc++6 4.7.0-6 GNU Standard C++ Library v3 ii python 2.6.6-14 interactive high-level object-orie ii zlib1g 1:1.2.6.dfsg-1 compression library - runtime tophat recommends no packages. Versions of packages tophat suggests: ii bowtie 0.12.7-3 ultrafast memory-efficient short r ii cufflinks 1.3.0-1 Transcript assembly, differential -- no debconf information -- To UNSUBSCRIBE, email to debian-bugs-rc-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org
