Your message dated Thu, 12 May 2011 04:02:20 +0000
with message-id <[email protected]>
and subject line Bug#625189: fixed in embassy-domalign 0.1.0+20100721-3
has caused the Debian Bug report #625189,
regarding embassy-domalign: FTBFS: configure: error: C compiler cannot create
executables
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
625189: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=625189
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: embassy-domalign
Version: 0.1.0+20100721-2
Severity: serious
Tags: wheezy sid
User: [email protected]
Usertags: qa-ftbfs-20110502 qa-ftbfs
Justification: FTBFS on amd64
Hi,
During a rebuild of all packages in sid, your package failed to build on
amd64.
Relevant part:
> make[1]: Entering directory
> `/build/user-embassy-domalign_0.1.0+20100721-2-amd64-5ItGLP/embassy-domalign-0.1.0+20100721'
> if test -e /usr/share/misc/config.guess ; then \
> for i in ./config.guess ; do \
> if ! test -e $i.cdbs-orig ; then \
> mv $i $i.cdbs-orig ; \
> cp --remove-destination
> /usr/share/misc/config.guess $i ; \
> fi ; \
> done ; \
> fi
> if test -e /usr/share/misc/config.sub ; then \
> for i in ./config.sub ; do \
> if ! test -e $i.cdbs-orig ; then \
> mv $i $i.cdbs-orig ; \
> cp --remove-destination
> /usr/share/misc/config.sub $i ; \
> fi ; \
> done ; \
> fi
> make[1]: Leaving directory
> `/build/user-embassy-domalign_0.1.0+20100721-2-amd64-5ItGLP/embassy-domalign-0.1.0+20100721'
> if test -e /usr/share/misc/config.guess ; then \
> for i in ./config.guess ; do \
> if ! test -e $i.cdbs-orig ; then \
> mv $i $i.cdbs-orig ; \
> cp --remove-destination
> /usr/share/misc/config.guess $i ; \
> fi ; \
> done ; \
> fi
> if test -e /usr/share/misc/config.sub ; then \
> for i in ./config.sub ; do \
> if ! test -e $i.cdbs-orig ; then \
> mv $i $i.cdbs-orig ; \
> cp --remove-destination
> /usr/share/misc/config.sub $i ; \
> fi ; \
> done ; \
> fi
> touch debian/stamp-autotools-files
> chmod a+x
> /build/user-embassy-domalign_0.1.0+20100721-2-amd64-5ItGLP/embassy-domalign-0.1.0+20100721/./configure
> mkdir -p .
> cd . && CFLAGS="-g -O2 -g -O2 -Wall -I/usr/lib/emboss/include
> -I/usr/lib/emboss/include/epcre -I/usr/lib/emboss/include/eplplot
> -L/usr/lib/emboss/lib -R/usr/lib/emboss/lib" CXXFLAGS="-g -O2 -g -O2 -Wall"
> CPPFLAGS="" LDFLAGS=" -Wl,--as-needed"
> /build/user-embassy-domalign_0.1.0+20100721-2-amd64-5ItGLP/embassy-domalign-0.1.0+20100721/./configure
> --build=x86_64-linux-gnu --prefix=/usr --includedir="\${prefix}/include"
> --mandir="\${prefix}/share/man" --infodir="\${prefix}/share/info"
> --sysconfdir=/etc --localstatedir=/var
> --libexecdir="\${prefix}/lib/embassy-domalign" --srcdir=.
> --disable-maintainer-mode --disable-dependency-tracking
> --disable-silent-rules --enable-systemlibs
> configure: WARNING: unrecognized options: --disable-maintainer-mode,
> --disable-silent-rules
> checking for a BSD-compatible install... /usr/bin/install -c
> checking whether build environment is sane... yes
> checking for a thread-safe mkdir -p... /bin/mkdir -p
> checking for gawk... no
> checking for mawk... mawk
> checking whether make sets $(MAKE)... yes
> checking build system type... x86_64-pc-linux-gnu
> checking host system type... x86_64-pc-linux-gnu
> checking for style of include used by make... GNU
> checking for gcc... gcc
> checking whether the C compiler works... no
> configure: error: in
> `/build/user-embassy-domalign_0.1.0+20100721-2-amd64-5ItGLP/embassy-domalign-0.1.0+20100721':
> configure: error: C compiler cannot create executables
> See `config.log' for more details.
> make: *** [debian/stamp-autotools] Error 77
The full build log is available from:
http://people.debian.org/~lucas/logs/2011/05/02/embassy-domalign_0.1.0+20100721-2_lsid64.buildlog
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
About the archive rebuild: The rebuild was done on about 50 AMD64 nodes
of the Grid'5000 platform, using a clean chroot. Internet was not
accessible from the build systems.
--
| Lucas Nussbaum
| [email protected] http://www.lucas-nussbaum.net/ |
| jabber: [email protected] GPG: 1024D/023B3F4F |
--- End Message ---
--- Begin Message ---
Source: embassy-domalign
Source-Version: 0.1.0+20100721-3
We believe that the bug you reported is fixed in the latest version of
embassy-domalign, which is due to be installed in the Debian FTP archive:
embassy-domalign_0.1.0+20100721-3.diff.gz
to main/e/embassy-domalign/embassy-domalign_0.1.0+20100721-3.diff.gz
embassy-domalign_0.1.0+20100721-3.dsc
to main/e/embassy-domalign/embassy-domalign_0.1.0+20100721-3.dsc
embassy-domalign_0.1.0+20100721-3_amd64.deb
to main/e/embassy-domalign/embassy-domalign_0.1.0+20100721-3_amd64.deb
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Charles Plessy <[email protected]> (supplier of updated embassy-domalign
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Thu, 12 May 2011 11:13:56 +0900
Source: embassy-domalign
Binary: embassy-domalign
Architecture: source amd64
Version: 0.1.0+20100721-3
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Charles Plessy <[email protected]>
Description:
embassy-domalign - Extra EMBOSS commands for protein domain alignment
Closes: 625189
Changes:
embassy-domalign (0.1.0+20100721-3) unstable; urgency=low
.
* Set RPATH with “-Wl,--rpath” as GCC 4.6 does not accept “-R” anymore.
(debian/rules) Closes: #625189, LP: #771115.
* Incremented Standards-Version to reflect conformance with Policy 3.9.2
(debian/control, no changes needed).
* Updated debian/embassy-domsearch.lintian-overrides for lintian 2.5.
* debian/copyright validated with config-edit.
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