Your message dated Tue, 22 Feb 2011 17:23:50 +0000
with message-id <e1prvxm-0004rw...@franck.debian.org>
and subject line Bug#614538: fixed in altree 1.0.1-4
has caused the Debian Bug report #614538,
regarding altree: FTBFS: *** glibc detected *** fig2dev: double free or 
corruption (!prev): 0x000000000092e010 ***
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
614538: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=614538
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: altree
Version: 1.0.1-3
Severity: serious
Tags: wheezy sid
User: debian...@lists.debian.org
Usertags: qa-ftbfs-20110221 qa-ftbfs
Justification: FTBFS on amd64

Hi,

During a rebuild of all packages in sid, your package failed to build on
amd64.

Relevant part:
> make[3]: Entering directory 
> `/build/user-altree_1.0.1-3-amd64-A7s0Oz/altree-1.0.1/Documentation'
>          ======> building  manual.bbl <======
> This is BibTeX, Version 0.99c (TeX Live 2009/Debian)
> The top-level auxiliary file: manual.aux
> The style file: plainnat.bst
> Database file #1: stage.bib
> Warning--empty year in YangPAML
> (There was 1 warning)
>          ======> building  fig/overview.pdftex <======
> sh: gs: not found
> Error in ghostcript command
> command was: gs -q -dNOPAUSE -sAutoRotatePages=None 
> -dAutoFilterColorImages=false -dColorImageFilter=/FlateEncode 
> -sDEVICE=pdfwrite -dPDFSETTINGS=/prepress -sOutputFile=fig/overview.pdftex - 
> -c quit
> *** glibc detected *** fig2dev: double free or corruption (!prev): 
> 0x000000000092e010 ***
> ======= Backtrace: =========
> /lib/libc.so.6(+0x71ad6)[0x2abd05c9aad6]
> /lib/libc.so.6(cfree+0x6c)[0x2abd05c9f84c]
> /lib/libc.so.6(fclose+0x14d)[0x2abd05c8ba1d]
> fig2dev[0x40403b]
> /lib/libc.so.6(__libc_start_main+0xfd)[0x2abd05c47c4d]
> fig2dev[0x4027c9]
> ======= Memory map: ========
> 00400000-00473000 r-xp 00000000 00:14 3234371                            
> /usr/bin/fig2dev
> 00673000-00679000 rw-p 00073000 00:14 3234371                            
> /usr/bin/fig2dev
> 00679000-0068c000 rw-p 00000000 00:00 0 
> 0092e000-0094f000 rw-p 00000000 00:00 0                                  
> [heap]
> 2abd0534f000-2abd0536d000 r-xp 00000000 00:14 3214622                    
> /lib/ld-2.11.2.so
> 2abd0536d000-2abd0536f000 rw-p 00000000 00:00 0 
> 2abd0556c000-2abd0556d000 r--p 0001d000 00:14 3214622                    
> /lib/ld-2.11.2.so
> 2abd0556d000-2abd0556e000 rw-p 0001e000 00:14 3214622                    
> /lib/ld-2.11.2.so
> 2abd0556e000-2abd0556f000 rw-p 00000000 00:00 0 
> 2abd0556f000-2abd05594000 r-xp 00000000 00:14 3233773                    
> /lib/libpng12.so.0.44.0
> 2abd05594000-2abd05794000 ---p 00025000 00:14 3233773                    
> /lib/libpng12.so.0.44.0
> 2abd05794000-2abd05795000 rw-p 00025000 00:14 3233773                    
> /lib/libpng12.so.0.44.0
> 2abd05795000-2abd057a5000 r-xp 00000000 00:14 3234206                    
> /usr/lib/libXpm.so.4.11.0
> 2abd057a5000-2abd059a5000 ---p 00010000 00:14 3234206                    
> /usr/lib/libXpm.so.4.11.0
> 2abd059a5000-2abd059a6000 rw-p 00010000 00:14 3234206                    
> /usr/lib/libXpm.so.4.11.0
> 2abd059a6000-2abd059a7000 rw-p 00000000 00:00 0 
> 2abd059a7000-2abd05a27000 r-xp 00000000 00:14 3214607                    
> /lib/libm-2.11.2.so
> 2abd05a27000-2abd05c27000 ---p 00080000 00:14 3214607                    
> /lib/libm-2.11.2.so
> 2abd05c27000-2abd05c28000 r--p 00080000 00:14 3214607                    
> /lib/libm-2.11.2.so
> 2abd05c28000-2abd05c29000 rw-p 00081000 00:14 3214607                    
> /lib/libm-2.11.2.so
> 2abd05c29000-2abd05d81000 r-xp 00000000 00:14 3214545                    
> /lib/libc-2.11.2.so
> 2abd05d81000-2abd05f80000 ---p 00158000 00:14 3214545                    
> /lib/libc-2.11.2.so
> 2abd05f80000-2abd05f84000 r--p 00157000 00:14 3214545                    
> /lib/libc-2.11.2.so
> 2abd05f84000-2abd05f85000 rw-p 0015b000 00:14 3214545                    
> /lib/libc-2.11.2.so
> 2abd05f85000-2abd05f8a000 rw-p 00000000 00:00 0 
> 2abd05f8a000-2abd05fa1000 r-xp 00000000 00:14 3226301                    
> /usr/lib/libz.so.1.2.3.4
> 2abd05fa1000-2abd061a0000 ---p 00017000 00:14 3226301                    
> /usr/lib/libz.so.1.2.3.4
> 2abd061a0000-2abd061a1000 rw-p 00016000 00:14 3226301                    
> /usr/lib/libz.so.1.2.3.4
> 2abd061a1000-2abd061a2000 rw-p 00000000 00:00 0 
> 2abd061a2000-2abd062da000 r-xp 00000000 00:14 3234168                    
> /usr/lib/libX11.so.6.3.0
> 2abd062da000-2abd064da000 ---p 00138000 00:14 3234168                    
> /usr/lib/libX11.so.6.3.0
> 2abd064da000-2abd064e0000 rw-p 00138000 00:14 3234168                    
> /usr/lib/libX11.so.6.3.0
> 2abd064e0000-2abd064fc000 r-xp 00000000 00:14 3233857                    
> /usr/lib/libxcb.so.1.1.0
> 2abd064fc000-2abd066fb000 ---p 0001c000 00:14 3233857                    
> /usr/lib/libxcb.so.1.1.0
> 2abd066fb000-2abd066fc000 rw-p 0001b000 00:14 3233857                    
> /usr/lib/libxcb.so.1.1.0
> 2abd066fc000-2abd066fe000 r-xp 00000000 00:14 3214538                    
> /lib/libdl-2.11.2.so
> 2abd066fe000-2abd068fe000 ---p 00002000 00:14 3214538                    
> /lib/libdl-2.11.2.so
> 2abd068fe000-2abd068ff000 r--p 00002000 00:14 3214538                    
> /lib/libdl-2.11.2.so
> 2abd068ff000-2abd06900000 rw-p 00003000 00:14 3214538                    
> /lib/libdl-2.11.2.so
> 2abd06900000-2abd06901000 rw-p 00000000 00:00 0 
> 2abd06901000-2abd06903000 r-xp 00000000 00:14 3233808                    
> /usr/lib/libXau.so.6.0.0
> 2abd06903000-2abd06b03000 ---p 00002000 00:14 3233808                    
> /usr/lib/libXau.so.6.0.0
> 2abd06b03000-2abd06b04000 rw-p 00002000 00:14 3233808                    
> /usr/lib/libXau.so.6.0.0
> 2abd06b04000-2abd06b09000 r-xp 00000000 00:14 3233833                    
> /usr/lib/libXdmcp.so.6.0.0
> 2abd06b09000-2abd06d08000 ---p 00005000 00:14 3233833                    
> /usr/lib/libXdmcp.so.6.0.0
> 2abd06d08000-2abd06d09000 rw-p 00004000 00:14 3233833                    
> /usr/lib/libXdmcp.so.6.0.0
> 2abd06d09000-2abd06d0b000 rw-p 00000000 00:00 0 
> 2abd06d0e000-2abd06d24000 r-xp 00000000 00:14 3214686                    
> /lib/libgcc_s.so.1
> 2abd06d24000-2abd06f23000 ---p 00016000 00:14 3214686                    
> /lib/libgcc_s.so.1
> 2abd06f23000-2abd06f24000 rw-p 00015000 00:14 3214686                    
> /lib/libgcc_s.so.1
> 2abd08000000-2abd08021000 rw-p 00000000 00:00 0 
> 2abd08021000-2abd0c000000 ---p 00000000 00:00 0 
> 7fffe4d2c000-7fffe4d41000 rw-p 00000000 00:00 0                          
> [stack]
> 7fffe4ddd000-7fffe4dde000 r-xp 00000000 00:00 0                          
> [vdso]
> ffffffffff600000-ffffffffff601000 r-xp 00000000 00:00 0                  
> [vsyscall]
> Aborted
> make[3]: *** [fig/overview.pdftex] Error 134

The full build log is available from:
   
http://people.debian.org/~lucas/logs/2011/02/21/altree_1.0.1-3_lsid64.buildlog

A list of current common problems and possible solutions is available at 
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

About the archive rebuild: The rebuild was done on about 50 AMD64 nodes
of the Grid'5000 platform, using a clean chroot.  Internet was not
accessible from the build systems.

-- 
| Lucas Nussbaum
| lu...@lucas-nussbaum.net   http://www.lucas-nussbaum.net/ |
| jabber: lu...@nussbaum.fr             GPG: 1024D/023B3F4F |



--- End Message ---
--- Begin Message ---
Source: altree
Source-Version: 1.0.1-4

We believe that the bug you reported is fixed in the latest version of
altree, which is due to be installed in the Debian FTP archive:

altree-examples_1.0.1-4_all.deb
  to main/a/altree/altree-examples_1.0.1-4_all.deb
altree_1.0.1-4.debian.tar.gz
  to main/a/altree/altree_1.0.1-4.debian.tar.gz
altree_1.0.1-4.dsc
  to main/a/altree/altree_1.0.1-4.dsc
altree_1.0.1-4_amd64.deb
  to main/a/altree/altree_1.0.1-4_amd64.deb



A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 614...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Andreas Tille <ti...@debian.org> (supplier of updated altree package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1

Format: 1.8
Date: Tue, 22 Feb 2011 14:37:21 +0100
Source: altree
Binary: altree altree-examples
Architecture: source amd64 all
Version: 1.0.1-4
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description: 
 altree     - program to perform phylogeny-based association and localization a
 altree-examples - example files for ALTree
Closes: 614538
Changes: 
 altree (1.0.1-4) unstable; urgency=low
 .
   [ Charles Plessy ]
   * Depends on libtamuanova-perl (debian/control).
   * Added a BibTeX reference in debian/reference and install it through
     debian/altree.docs.
   * Refreshed debian/copyright.
   * Using debhelper 7 (debian/compat, debian/control).
   * Incremented Standards-Version to reflect conformance to Policy 3.8.1
     (no changes needed).
   * Bash completion:
     - Build-depend on bash-completion >= 1:1 in debian/control.
     - Install the altree completion file using dh_bash-completion.
   * Added information about Upstream in debian/upstream-metadata.yaml.
 .
   [ David Paleino ]
   * debian/control:
     - removed unneeded Build-Dependencies
     - added ${misc:Depends} dependency to altree-examples
     - removed myself from Uploaders
   * debian/rules:
     - removing unneeded included Makefile
 .
   [Andreas Tille]
   * use short debhelper instead of cdbs because the install target
     did not worked properly any more
   * debian/source/format: 3.0 (quilt)
   * debian/control:
     - Standards-Version: 3.9.1
     - Added myself to Uploaders
     - Added Build-Depends: ghostscript to avoid errors in LaTeX run
       Closes: #614538
     - Removed libtamuanova-perl from Depends again because it has no
       installation candidate
Checksums-Sha1: 
 f4a483bb8397200a3ff6ccf78d96c1b2edc15036 1518 altree_1.0.1-4.dsc
 4e59456d8b11241d4befdf489e30d29a6287c5ee 5034 altree_1.0.1-4.debian.tar.gz
 3f3661ebf64c9f33437c0e30572a4b154f90808f 299024 altree_1.0.1-4_amd64.deb
 2051a271ab5280ef6f5aba3794ee20e53b62d511 379170 altree-examples_1.0.1-4_all.deb
Checksums-Sha256: 
 b143d8d3f834cc05883178d3fb420948ff91e0f39cac8db5d770269cb0744200 1518 
altree_1.0.1-4.dsc
 419ca2c649cce974a8e4bfb3e9ff27e2eede9435c602a58f16124c81e5145252 5034 
altree_1.0.1-4.debian.tar.gz
 bf2f95763126ad2410e8b5c2eb34e36344a43f0efb86cee6d7aa136138091dd6 299024 
altree_1.0.1-4_amd64.deb
 03532ea39ee35f7282eba78442fbee8cf01701cc6048c3b519964496fb0a35c5 379170 
altree-examples_1.0.1-4_all.deb
Files: 
 40c98cc906bbfcf27deda0428e66adb5 1518 science optional altree_1.0.1-4.dsc
 46c3e937cc5f432f65a2a81cb14fbbeb 5034 science optional 
altree_1.0.1-4.debian.tar.gz
 ab32df66872723aa7ff4c09ee6a31425 299024 science optional 
altree_1.0.1-4_amd64.deb
 e7bbade5d06bbcec9501aaab2a9da090 379170 science optional 
altree-examples_1.0.1-4_all.deb

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--- End Message ---

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