Dear maintainer,
I've prepared an NMU for pymol (versioned as 1.2r2-1.1) and
uploaded it to DELAYED/2.
Regards.
diff -u pymol-1.2r2/debian/changelog pymol-1.2r2/debian/changelog
--- pymol-1.2r2/debian/changelog
+++ pymol-1.2r2/debian/changelog
@@ -1,3 +1,12 @@
+pymol (1.2r2-1.1) unstable; urgency=low
+
+ * Non-maintainer upload.
+ * debian/patches/23_bts576210_FTBFS_ia64.dpatch
+ - fix a FTBFS on ia64, working aroung a bug in GCC; thanks to Jakub Wilk for
+ the report and patch; Closes: #576210
+
+ -- Sandro Tosi <mo...@debian.org> Mon, 10 May 2010 09:34:51 +0200
+
pymol (1.2r2-1) unstable; urgency=low
* New upstream release. This upload is dedicated to the pymol founder and
diff -u pymol-1.2r2/debian/patches/00list pymol-1.2r2/debian/patches/00list
--- pymol-1.2r2/debian/patches/00list
+++ pymol-1.2r2/debian/patches/00list
@@ -12,0 +13 @@
+23_bts576210_FTBFS_ia64
only in patch2:
unchanged:
--- pymol-1.2r2.orig/debian/patches/23_bts576210_FTBFS_ia64.dpatch
+++ pymol-1.2r2/debian/patches/23_bts576210_FTBFS_ia64.dpatch
@@ -0,0 +1,20 @@
+#! /bin/sh /usr/share/dpatch/dpatch-run
+## 23_bts576210_FTBFS_ia64.dpatch by Jakub Wilk <jw...@debian.org>
+##
+## All lines beginning with `## DP:' are a description of the patch.
+## DP: Fix a FTBFS on ia64 (GCC problem workaround)
+
+...@dpatch@
+diff -urNad '--exclude=CVS' '--exclude=.svn' '--exclude=.git' '--exclude=.arch' '--exclude=.hg' '--exclude=_darcs' '--exclude=.bzr' pymol-1.2r2~/setup.py pymol-1.2r2/setup.py
+--- pymol-1.2r2~/setup.py 2010-05-10 09:12:01.000000000 +0200
++++ pymol-1.2r2/setup.py 2010-05-10 09:12:04.000000000 +0200
+@@ -146,6 +146,9 @@
+ ("_PYMOL_VMD_PLUGINS",None)
+ ]
+ ext_comp_args=["-ffast-math","-funroll-loops","-O3"]
++ if os.uname()[-1] == 'ia64':
++ # Mitigate bug #576198:
++ del ext_comp_args[-1]
+ ext_link_args=[]
+
+ setup ( # Distribution meta-data
