I forgot to add: Like Paul Seelig suggested, those big changes should not happen in an hidden way. You should modify the package to introduce a postinst script that shows some dialog, that tells the user what is going on, why is this change happening, give some links on where to find further informations, how to revert the change and most of all put a "YES/NO" to let the user decide if he wants to do the change, after he is aware that the change might break his system. -- Salvo Tomaselli
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