Your message dated Mon, 28 Sep 2009 23:03:12 +0000
with message-id <e1mspfq-0002dl...@ries.debian.org>
and subject line Bug#536956: fixed in t-coffee 8.06-1
has caused the Debian Bug report #536956,
regarding t-coffee: FTBFS: dpkg-gencontrol: error: error occurred while parsing
Suggests field: boxshade, seaview, t-coffee-doc, t-coffee-examples
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
536956: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=536956
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: t-coffee
Version: 5.72-1
Severity: serious
User: debian...@lists.debian.org
Usertags: qa-ftbfs-20090713 qa-ftbfs
Justification: FTBFS on amd64
Hi,
During a rebuild of all packages in sid, your package failed to build on
amd64.
Relevant part:
> /usr/bin/fakeroot debian/rules binary
> test -x debian/rules
> dh_testroot
> dh_clean -k
> dh_installdirs -A
> mkdir -p "."
> DEB_MAKE_CHECK_TARGET unset, not running checks
> DEB_MAKE_INSTALL_TARGET unset, skipping default makefile.mk common-install
> target
> dh_installdirs -pt-coffee-examples
> dh_installdirs -pt-coffee-doc
> dh_installdocs -pt-coffee-examples
> dh_installexamples -pt-coffee-examples
> dh_installman -pt-coffee-examples
> dh_installinfo -pt-coffee-examples
> dh_installmenu -pt-coffee-examples
> dh_installcron -pt-coffee-examples
> dh_installinit -pt-coffee-examples
> dh_installdebconf -pt-coffee-examples
> dh_installemacsen -pt-coffee-examples
> dh_installcatalogs -pt-coffee-examples
> dh_installpam -pt-coffee-examples
> dh_installlogrotate -pt-coffee-examples
> dh_installlogcheck -pt-coffee-examples
> dh_installchangelogs -pt-coffee-examples
> dh_installudev -pt-coffee-examples
> dh_lintian -pt-coffee-examples
> dh_install -pt-coffee-examples
> dh_link -pt-coffee-examples
> dh_installmime -pt-coffee-examples
> dh_installdocs -pt-coffee-doc
> dh_installexamples -pt-coffee-doc
> dh_installman -pt-coffee-doc
> dh_installinfo -pt-coffee-doc
> dh_installmenu -pt-coffee-doc
> dh_installcron -pt-coffee-doc
> dh_installinit -pt-coffee-doc
> dh_installdebconf -pt-coffee-doc
> dh_installemacsen -pt-coffee-doc
> dh_installcatalogs -pt-coffee-doc
> dh_installpam -pt-coffee-doc
> dh_installlogrotate -pt-coffee-doc
> dh_installlogcheck -pt-coffee-doc
> dh_installchangelogs -pt-coffee-doc
> dh_installudev -pt-coffee-doc
> dh_lintian -pt-coffee-doc
> dh_install -pt-coffee-doc
> dh_link -pt-coffee-doc
> dh_installmime -pt-coffee-doc
> dh_strip -pt-coffee-examples
> dh_compress -pt-coffee-examples
> dh_fixperms -pt-coffee-examples
> dh_makeshlibs -pt-coffee-examples
> dh_strip -pt-coffee-doc
> dh_compress -pt-coffee-doc
> dh_fixperms -pt-coffee-doc
> dh_makeshlibs -pt-coffee-doc
> dh_installdeb -pt-coffee-examples
> dh_perl -pt-coffee-examples
> dh_shlibdeps -pt-coffee-examples
> dh_installdeb -pt-coffee-doc
> dh_perl -pt-coffee-doc
> dh_shlibdeps -pt-coffee-doc
> dh_gencontrol -pt-coffee-examples
> dh_md5sums -pt-coffee-examples
> dh_builddeb -pt-coffee-examples
> dpkg-deb: building package `t-coffee-examples' in
> `../t-coffee-examples_5.72-1_all.deb'.
> dh_gencontrol -pt-coffee-doc
> dh_md5sums -pt-coffee-doc
> dh_builddeb -pt-coffee-doc
> dpkg-deb: building package `t-coffee-doc' in `../t-coffee-doc_5.72-1_all.deb'.
> dh_installdirs -pt-coffee
> dh_installdocs -pt-coffee
> dh_installexamples -pt-coffee
> dh_installman -pt-coffee
> dh_installinfo -pt-coffee
> dh_installmenu -pt-coffee
> dh_installcron -pt-coffee
> dh_installinit -pt-coffee
> dh_installdebconf -pt-coffee
> dh_installemacsen -pt-coffee
> dh_installcatalogs -pt-coffee
> dh_installpam -pt-coffee
> dh_installlogrotate -pt-coffee
> dh_installlogcheck -pt-coffee
> dh_installchangelogs -pt-coffee
> dh_installudev -pt-coffee
> dh_lintian -pt-coffee
> dh_install -pt-coffee
> dh_link -pt-coffee
> dh_installmime -pt-coffee
> dh_strip -pt-coffee
> dh_compress -pt-coffee
> dh_fixperms -pt-coffee
> dh_makeshlibs -pt-coffee
> dh_installdeb -pt-coffee
> dh_perl -pt-coffee
> dh_shlibdeps -pt-coffee
> dpkg-shlibdeps: warning: debian/t-coffee/usr/bin/t_coffee contains an
> unresolvable reference to symbol __ctype_b_...@glibc_2.3: it's probably a
> plugin.
> dpkg-shlibdeps: warning: 71 other similar warnings have been skipped (use -v
> to see them all).
> dpkg-shlibdeps: warning: dependency on libm.so.6 could be avoided if
> "debian/t-coffee/usr/bin/t_coffee" were not uselessly linked against it (they
> use none of its symbols).
> dpkg-shlibdeps: warning: dependency on libc.so.6 could be avoided if
> "debian/t-coffee/usr/bin/t_coffee" were not uselessly linked against it (they
> use none of its symbols).
> dh_gencontrol -pt-coffee
> dpkg-gencontrol: warning: can't parse dependency t-coffee-examples
> dialign-tx
> dpkg-gencontrol: error: error occurred while parsing Suggests field:
> boxshade, seaview, t-coffee-doc, t-coffee-examples
> dialign-tx, kalign, mafft, muscle, poa, probcons, clustalw
> dh_gencontrol: dpkg-gencontrol returned exit code 255
> make: *** [binary-makedeb-IMPL/t-coffee] Error 1
The full build log is available from:
http://people.debian.org/~lucas/logs/2009/07/13/t-coffee_5.72-1_lsid64.buildlog
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
About the archive rebuild: The rebuild was done on about 50 AMD64 nodes
of the Grid'5000 platform, using a clean chroot. Internet was not
accessible from the build systems.
--
| Lucas Nussbaum
| lu...@lucas-nussbaum.net http://www.lucas-nussbaum.net/ |
| jabber: lu...@nussbaum.fr GPG: 1024D/023B3F4F |
--- End Message ---
--- Begin Message ---
Source: t-coffee
Source-Version: 8.06-1
We believe that the bug you reported is fixed in the latest version of
t-coffee, which is due to be installed in the Debian FTP archive:
t-coffee-doc_8.06-1_all.deb
to pool/main/t/t-coffee/t-coffee-doc_8.06-1_all.deb
t-coffee-examples_8.06-1_all.deb
to pool/main/t/t-coffee/t-coffee-examples_8.06-1_all.deb
t-coffee_8.06-1.diff.gz
to pool/main/t/t-coffee/t-coffee_8.06-1.diff.gz
t-coffee_8.06-1.dsc
to pool/main/t/t-coffee/t-coffee_8.06-1.dsc
t-coffee_8.06-1_amd64.deb
to pool/main/t/t-coffee/t-coffee_8.06-1_amd64.deb
t-coffee_8.06.orig.tar.gz
to pool/main/t/t-coffee/t-coffee_8.06.orig.tar.gz
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 536...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <ti...@debian.org> (supplier of updated t-coffee package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.8
Date: Fri, 25 Sep 2009 14:41:41 +0200
Source: t-coffee
Binary: t-coffee t-coffee-examples t-coffee-doc
Architecture: source all amd64
Version: 8.06-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
t-coffee - Multiple Sequence Alignment
t-coffee-doc - PDF and HTML accompaning documents to T-Coffee
t-coffee-examples - annotated examples for the use of T-Coffee
Closes: 536956
Changes:
t-coffee (8.06-1) unstable; urgency=low
.
[ Charles Plessy ]
TODO:
Identify differences and document relevant ones.
Check that the patch can be dropped.
Support PDB in getdata.
Get the FORTRAN building right.
NOTE
The upstream install system was completely refactored, and T-Coffee
includes new functionalities that require internet access. We have to
understand them before updating our package.
.
* New upstream release
- say something about libsoap-lite-perl ?
* debian/control:
- t-coffee recommends libsoap-lite-perl.
- Added missing comma in t-coffee Suggests field (Closes:#536956).
.
[ Andreas Tille ]
* debian/control:
- Standards-Version: 3.8.3 (added README.source)
- Added myself to uploaders
- s/Debian-Med/Debian Med/
- Bumped debhelper version to >= 7.1 to possibly enable short
rules files.
- Added "Depends: ${misc:Depends}" to all packages
Checksums-Sha1:
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8656dd49cd4ea4a7409f5f0250989ffbe383e3e1 6611 t-coffee_8.06-1.diff.gz
0819f679465111b6fbf01a448aec352678f33a6f 1096474
t-coffee-examples_8.06-1_all.deb
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99227bc2730f2b7c1c29278c632b5f47d12a3279 722828 t-coffee_8.06-1_amd64.deb
Checksums-Sha256:
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t-coffee_8.06.orig.tar.gz
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t-coffee_8.06-1_amd64.deb
Files:
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ce4d7893dccc006cb45ed1f0aa15c30d 4177711 science optional
t-coffee_8.06.orig.tar.gz
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b57c0c4038f8893da3abc6f1931cdb7a 1096474 science optional
t-coffee-examples_8.06-1_all.deb
1e8cb49f9d7bf41fb3692171afbafc4b 795468 doc optional
t-coffee-doc_8.06-1_all.deb
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t-coffee_8.06-1_amd64.deb
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--- End Message ---
