Your message dated Sat, 29 Dec 2007 03:47:05 +0000 with message-id <[EMAIL PROTECTED]> and subject line Bug#456860: fixed in gromacs 3.3.2-3 has caused the attached Bug report to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what I am talking about this indicates a serious mail system misconfiguration somewhere. Please contact me immediately.) Debian bug tracking system administrator (administrator, Debian Bugs database)
--- Begin Message ---Package: gromacs version: 3.3.2-2 Severity: serious User: [EMAIL PROTECTED] Usertags: qa-ftbfs-20071217 qa-ftbfs Justification: FTBFS on i386 Hi, During a rebuild of all packages in sid, your package failed to build on i386. Relevant part: > checking whether mpicc.openmpi accepts -malign-double... yes > checking whether mpicc.openmpi accepts -funroll-all-loops... yes > checking whether mpicc.openmpi accepts -O3 -fomit-frame-pointer > -finline-functions -Wall -Wno-unused -malign-double -funroll-all-loops... yes > checking for grep that handles long lines and -e... /bin/grep > checking for egrep... /bin/grep -E > checking for ANSI C header files... no > checking for sys/types.h... yes > checking for sys/stat.h... yes > checking for stdlib.h... yes > checking for string.h... yes > checking for memory.h... yes > checking for strings.h... yes > checking for inttypes.h... yes > checking for stdint.h... yes > checking for unistd.h... yes > checking whether byte ordering is bigendian... no > checking for int... yes > checking size of int... configure: error: cannot compute sizeof (int) > See `config.log' for more details. > make: *** [build-openmpi] Error 77 > dpkg-buildpackage: failure: debian/rules build gave error exit status 2 The full build log is available from: http://people.debian.org/~lucas/logs/2007/12/17 A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! About the archive rebuild: The rebuild was done on about 50 AMD64 nodes of the Grid'5000 platform, using a clean chroot containing a sid i386 environment. Internet was not accessible from the build systems. -- | Lucas Nussbaum | [EMAIL PROTECTED] http://www.lucas-nussbaum.net/ | | jabber: [EMAIL PROTECTED] GPG: 1024D/023B3F4F |
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--- Begin Message ---Source: gromacs Source-Version: 3.3.2-3 We believe that the bug you reported is fixed in the latest version of gromacs, which is due to be installed in the Debian FTP archive: gromacs-dev_3.3.2-3_i386.deb to pool/main/g/gromacs/gromacs-dev_3.3.2-3_i386.deb gromacs-doc_3.3.2-3_all.deb to pool/main/g/gromacs/gromacs-doc_3.3.2-3_all.deb gromacs-lam_3.3.2-3_i386.deb to pool/main/g/gromacs/gromacs-lam_3.3.2-3_i386.deb gromacs-mpich_3.3.2-3_i386.deb to pool/main/g/gromacs/gromacs-mpich_3.3.2-3_i386.deb gromacs-openmpi_3.3.2-3_i386.deb to pool/main/g/gromacs/gromacs-openmpi_3.3.2-3_i386.deb gromacs_3.3.2-3.diff.gz to pool/main/g/gromacs/gromacs_3.3.2-3.diff.gz gromacs_3.3.2-3.dsc to pool/main/g/gromacs/gromacs_3.3.2-3.dsc gromacs_3.3.2-3_i386.deb to pool/main/g/gromacs/gromacs_3.3.2-3_i386.deb A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to [EMAIL PROTECTED], and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Nicholas Breen <[EMAIL PROTECTED]> (supplier of updated gromacs package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing [EMAIL PROTECTED]) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 Format: 1.7 Date: Wed, 26 Dec 2007 12:26:09 -0800 Source: gromacs Binary: gromacs-openmpi gromacs gromacs-lam gromacs-dev gromacs-mpich gromacs-doc Architecture: source i386 all Version: 3.3.2-3 Distribution: unstable Urgency: low Maintainer: Debichem Team <[EMAIL PROTECTED]> Changed-By: Nicholas Breen <[EMAIL PROTECTED]> Description: gromacs - Molecular dynamics simulator, with building and analysis tools gromacs-dev - GROMACS molecular dynamics sim, development kit gromacs-doc - GROMACS molecular dynamics sim, documentation gromacs-lam - Molecular dynamics sim, binaries for LAM-MPI parallelization gromacs-mpich - Molecular dynamics sim, binaries for MPICH parallelization gromacs-openmpi - Molecular dynamics sim, binaries for OpenMPI parallelization Closes: 456860 Changes: gromacs (3.3.2-3) unstable; urgency=low . * Package transferred to Debichem team maintenance. * debian/control: - Switched Uploader to Debichem Team, moved myself to Uploaders. Added Vcs-Browser, Vcs-Svn fields. - Increase Standards-Version to 3.7.3. No changes required. - Build-Depend on libopenmpi-dev >= 1.2.4-5 (Closes: #456860). * debian/rules: include kfreebsd-* variants explicitly in OPENMPI_ARCH. * debian/patches/11_readme.dpatch: change edited README to an explicit patch, rather than modifying it directly in the .diff.gz. * Multiple bugfixes from upstream CVS: - 51_180_degree_angle.dpatch: apply upstream patches to avoid crashes crashes when operating on precisely linear 2-bond pairs. (cf. http://bugzilla.gromacs.org/show_bug.cgi?id=172, http://bugzilla.gromacs.org/show_bug.cgi?id=177) - 52_pme_spline.dpatch: calculate mesh contribution when charges are 0 in A state, but non-zero in B state. (cf. http://bugzilla.gromacs.org/show_bug.cgi?id=175) - 53_pbc_compiler: Solve regression in gmxlib/pbc.c introduced by a previous compiler workaround. (cf. http://bugzilla.gromacs.org/show_bug.cgi?id=179) * debian/gromacs-doc.doc-base: remove extraneous spaces. Files: 2464e6277acf15c1e87997164f3ab3db 1166 science extra gromacs_3.3.2-3.dsc 2ae597147dfa24e6b963c1ea0aacf7cc 1743596 science extra gromacs_3.3.2-3.diff.gz e8e3703bd6e0ffce00dac68add261fb0 2712458 doc extra gromacs-doc_3.3.2-3_all.deb abbbc9317bcfff1f52d7e073d9f5576e 6394512 science extra gromacs_3.3.2-3_i386.deb ed21f4345f1571518c4d7ab61cd2f8d1 14351364 devel extra gromacs-dev_3.3.2-3_i386.deb 47c2ca5508ffc9059eb14de8c16ee5e9 3318676 science extra gromacs-mpich_3.3.2-3_i386.deb 00e063c452d2dd5da988bd81f397ebfd 2816140 science extra gromacs-lam_3.3.2-3_i386.deb f7a3b4841d2022419be76b1c3b2b2c20 2820094 science extra gromacs-openmpi_3.3.2-3_i386.deb -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.2.1 (GNU/Linux) iD8DBQFHdbsPmHaJYZ7RAb8RAgsJAJ9FpH4bnEA1eTMaMHudYkWv35JkawCbBWHv 0IWNo9H7vRKYVtMj/rZJPjk= =OlSz -----END PGP SIGNATURE-----
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