Hi,
I also had issues with FcgidInitialEnv PHPRC in virtual host context and
it looked like it was being ignored, however, phpinfo() told me it wasn't.
I was actually trying to add a single overriden variable per virtual host
(error_log location) and to accomplish that, I added a new
/etc/php5/cgi-local directory with php.ini symlinked back to /etc/php5/cgi.
But, then I didn't just symlink /etc/php5/cgi-local/conf.d back to
/etc/php5/cgi/conf.d, instead I made a new directory that included symlinks
to files in the generic conf.d, except that at the end I also placed my own
zz-local-override.ini file.
The problem there was that the PHPRC variable is wholly irrelevant as far as
conf.d location is concerned - I had to change the PHP_INI_SCAN_DIR variable
instead. This actually turns out to be even more convenient because I don't
have to touch PHPRC or php.ini itself.
HTH...
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