Source: slicer Version: 3.4.0~svn10438-7 Severity: serious Tags: squeeze sid User: debian...@lists.debian.org Usertags: qa-ftbfs-20110221 qa-ftbfs Justification: FTBFS on amd64
Hi, During a rebuild of all packages in sid, your package failed to build on amd64. Relevant part: > make[3]: Entering directory > `/build/user-slicer_3.4.0~svn10438-7-amd64-uqn7r8/slicer-3.4.0~svn10438/DEB_build_shared' > [ 4%] Building CXX object > Modules/Meshing/IO/CMakeFiles/mimxMeshIO.dir/vtkMimxAbaqusFileWriter.o > [ 4%] Building CXX object Libs/Qdec/CMakeFiles/Qdec.dir/QdecGlmFitResults.o > [ 4%] Building CXX object > Libs/FreeSurfer/CMakeFiles/FreeSurfer.dir/vtkFSSurfaceWFileReader.o > [ 4%] Building CXX object Libs/Qdec/CMakeFiles/Qdec.dir/QdecSubject.o > /build/user-slicer_3.4.0~svn10438-7-amd64-uqn7r8/slicer-3.4.0~svn10438/Modules/Meshing/IO/vtkMimxAbaqusFileWriter.cxx: > In member function 'void > vtkMimxAbaqusFileWriter::WriteBoundaryConditions(std::ostream&, > vtkUnstructuredGrid*)': > /build/user-slicer_3.4.0~svn10438-7-amd64-uqn7r8/slicer-3.4.0~svn10438/Modules/Meshing/IO/vtkMimxAbaqusFileWriter.cxx:673: > warning: 'static float vtkMath::DegreesToRadians()' is deprecated (declared > at /usr/include/vtk-5.6/vtkMath.h:946) > /build/user-slicer_3.4.0~svn10438-7-amd64-uqn7r8/slicer-3.4.0~svn10438/Modules/Meshing/IO/vtkMimxAbaqusFileWriter.cxx:688: > warning: 'static float vtkMath::DegreesToRadians()' is deprecated (declared > at /usr/include/vtk-5.6/vtkMath.h:946) > /build/user-slicer_3.4.0~svn10438-7-amd64-uqn7r8/slicer-3.4.0~svn10438/Modules/Meshing/IO/vtkMimxAbaqusFileWriter.cxx:703: > warning: 'static float vtkMath::DegreesToRadians()' is deprecated (declared > at /usr/include/vtk-5.6/vtkMath.h:946) > make[3]: *** No rule to make target `/usr/lib/libmysqlclient.so', needed by > `bin/libQdec.so.3.4.0'. Stop. > make[3]: *** Waiting for unfinished jobs.... > [ 4%] [ 4%] Building CXX object > Libs/Qdec/CMakeFiles/Qdec.dir/QdecUtilities.o > Building CXX object > Modules/Meshing/IO/CMakeFiles/mimxMeshIO.dir/vtkMimxIntervertebralDiscAbaqusWriter.o > [ 4%] Linking CXX shared library ../../bin/libModuleDescriptionParser.so > Building CXX object > Libs/FreeSurfer/CMakeFiles/FreeSurfer.dir/vtkFSSurfaceLabelReader.o > make[3]: Leaving directory > `/build/user-slicer_3.4.0~svn10438-7-amd64-uqn7r8/slicer-3.4.0~svn10438/DEB_build_shared' > make[2]: *** [Libs/Qdec/CMakeFiles/Qdec.dir/all] Error 2 > make[2]: *** Waiting for unfinished jobs.... > [ 4%] Building CXX object > Libs/FreeSurfer/CMakeFiles/FreeSurfer.dir/vtkFSLookupTable.o > [ 4%] Building CXX object > Libs/FreeSurfer/CMakeFiles/FreeSurfer.dir/vtkFSIOTcl.o > make[3]: Leaving directory > `/build/user-slicer_3.4.0~svn10438-7-amd64-uqn7r8/slicer-3.4.0~svn10438/DEB_build_shared' > [ 4%] Built target ModuleDescriptionParser > [ 4%] Building CXX object > Libs/vtkTeem/CMakeFiles/vtkTeem.dir/vtkTeemEstimateDiffusionTensor.o > [ 4%] Building CXX object > Libs/vtkITK/CMakeFiles/vtkITK.dir/vtkITKArchetypeImageSeriesVectorReaderSeries.o > [ 4%] Building CXX object > Modules/Meshing/IO/CMakeFiles/mimxMeshIO.dir/vtkPluginFilterWatcher.o > [ 5%] Building CXX object > Libs/vtkITK/CMakeFiles/vtkITK.dir/vtkITKImageWriter.o > [ 5%] Building CXX object > Libs/FreeSurfer/CMakeFiles/FreeSurfer.dir/vtkFSSurfaceReaderTcl.o > make[3]: *** No rule to make target `/usr/lib/libmysqlclient.so', needed by > `bin/libmimxMeshIO.so.3.4.0'. Stop. > make[3]: *** Waiting for unfinished jobs.... > [ 5%] Building CXX object > Modules/Meshing/IO/CMakeFiles/mimxMeshIO.dir/ModuleProcessInformation.o > [ 5%] Building CXX object > Libs/FreeSurfer/CMakeFiles/FreeSurfer.dir/vtkFSSurfaceAnnotationReaderTcl.o > [ 5%] Building CXX object > Libs/FreeSurfer/CMakeFiles/FreeSurfer.dir/vtkFSSurfaceScalarReaderTcl.o > make[2]: make[3]: Leaving directory > `/build/user-slicer_3.4.0~svn10438-7-amd64-uqn7r8/slicer-3.4.0~svn10438/DEB_build_shared' > *** [Modules/Meshing/IO/CMakeFiles/mimxMeshIO.dir/all] Error 2 > [ 5%] Building CXX object > Libs/vtkTeem/CMakeFiles/vtkTeem.dir/vtkDiffusionTensorGlyph.o > [ 5%] Building CXX object > Libs/FreeSurfer/CMakeFiles/FreeSurfer.dir/vtkFSSurfaceWFileReaderTcl.o > [ 5%] Building CXX object > Libs/FreeSurfer/CMakeFiles/FreeSurfer.dir/vtkFSSurfaceLabelReaderTcl.o > make[3]: *** No rule to make target `/usr/lib/libmysqlclient.so', needed by > `bin/libFreeSurfer.so.3.4.0'. Stop. > make[3]: *** Waiting for unfinished jobs.... > [ 5%] [ 6%] Building CXX object > Libs/FreeSurfer/CMakeFiles/FreeSurfer.dir/vtkFSLookupTableTcl.o > Building CXX object Libs/FreeSurfer/CMakeFiles/FreeSurfer.dir/FreeSurferInit.o > [ 6%] [ 6%] Building CXX object > Libs/vtkTeem/CMakeFiles/vtkTeem.dir/vtkPolyDataTensorToColor.o > Building CXX object > Libs/vtkTeem/CMakeFiles/vtkTeem.dir/vtkBSplineInterpolateImageFunction.o > [ 6%] Building CXX object > Libs/vtkITK/CMakeFiles/vtkITK.dir/vtkITKGradientAnisotropicDiffusionImageFilter.o > [ 6%] Building CXX object > Libs/vtkTeem/CMakeFiles/vtkTeem.dir/vtkHyperPointandArray.o > make[3]: Leaving directory > `/build/user-slicer_3.4.0~svn10438-7-amd64-uqn7r8/slicer-3.4.0~svn10438/DEB_build_shared' > make[2]: *** [Libs/FreeSurfer/CMakeFiles/FreeSurfer.dir/all] Error 2 > [ 6%] Building CXX object > Libs/vtkITK/CMakeFiles/vtkITK.dir/vtkITKDistanceTransform.o > [ 6%] Building CXX object > Libs/vtkTeem/CMakeFiles/vtkTeem.dir/vtkHyperStreamlineDTMRI.o > [ 6%] Building CXX object > Libs/vtkTeem/CMakeFiles/vtkTeem.dir/vtkHyperStreamlineTeem.o > [ 6%] Building CXX object > Libs/vtkTeem/CMakeFiles/vtkTeem.dir/vtkPreciseHyperStreamline.o > [ 6%] Building CXX object > Libs/vtkTeem/CMakeFiles/vtkTeem.dir/vtkPreciseHyperStreamlinePoints.o > [ 6%] Building CXX object Libs/vtkTeem/CMakeFiles/vtkTeem.dir/vtkSeedTracts.o > [ 6%] Building CXX object > Libs/vtkTeem/CMakeFiles/vtkTeem.dir/vtkTensorImplicitFunctionToFunctionSet.o > [ 6%] Building CXX object > Libs/vtkTeem/CMakeFiles/vtkTeem.dir/vtkTractographyPointAndArray.o > [ 6%] Building CXX object Libs/vtkTeem/CMakeFiles/vtkTeem.dir/vtkTensorMask.o > [ 6%] Building CXX object > Libs/vtkITK/CMakeFiles/vtkITK.dir/vtkITKLevelTracingImageFilter.o > [ 7%] Building CXX object > Libs/vtkTeem/CMakeFiles/vtkTeem.dir/vtkTensorRotate.o > [ 7%] Building CXX object > Libs/vtkITK/CMakeFiles/vtkITK.dir/vtkITKLevelTracing3DImageFilter.o > [ 7%] Building CXX object > Libs/vtkITK/CMakeFiles/vtkITK.dir/vtkITKWandImageFilter.o > [ 7%] Building CXX object > Libs/vtkITK/CMakeFiles/vtkITK.dir/vtkITKNewOtsuThresholdImageFilter.o > [ 7%] Building CXX object > Libs/vtkTeem/CMakeFiles/vtkTeem.dir/vtkImageLabelCombine.o > [ 7%] Building CXX object > Libs/vtkTeem/CMakeFiles/vtkTeem.dir/vtkNRRDReaderTcl.o > [ 7%] Building CXX object > Libs/vtkTeem/CMakeFiles/vtkTeem.dir/vtkNRRDWriterTcl.o > [ 7%] Building CXX object > Libs/vtkTeem/CMakeFiles/vtkTeem.dir/vtkDiffusionTensorMathematicsTcl.o > [ 7%] Building CXX object > Libs/vtkTeem/CMakeFiles/vtkTeem.dir/vtkDiffusionTensorMathematicsSimpleTcl.o > [ 7%] [ 7%] Building CXX object > Libs/vtkTeem/CMakeFiles/vtkTeem.dir/vtkTeemEstimateDiffusionTensorTcl.o > Building CXX object > Libs/vtkTeem/CMakeFiles/vtkTeem.dir/vtkDiffusionTensorGlyphTcl.o > [ 7%] [ 7%] Building CXX object > Libs/vtkITK/CMakeFiles/vtkITK.dir/vtkITKBSplineTransform.o > Building CXX object > Libs/vtkTeem/CMakeFiles/vtkTeem.dir/vtkPolyDataTensorToColorTcl.o > [ 7%] Building CXX object > Libs/vtkTeem/CMakeFiles/vtkTeem.dir/vtkBSplineInterpolateImageFunctionTcl.o > [ 7%] Building CXX object > Libs/vtkTeem/CMakeFiles/vtkTeem.dir/vtkHyperStreamlineDTMRITcl.o > [ 7%] Building CXX object > Libs/vtkTeem/CMakeFiles/vtkTeem.dir/vtkHyperStreamlineTeemTcl.o > [ 7%] Building CXX object > Libs/vtkTeem/CMakeFiles/vtkTeem.dir/vtkPreciseHyperStreamlineTcl.o > [ 7%] Building CXX object > Libs/vtkTeem/CMakeFiles/vtkTeem.dir/vtkPreciseHyperStreamlinePointsTcl.o > [ 7%] Building CXX object > Libs/vtkITK/CMakeFiles/vtkITK.dir/vtkITKTimeSeriesDatabase.o > [ 7%] Building CXX object > Libs/vtkTeem/CMakeFiles/vtkTeem.dir/vtkSeedTractsTcl.o > [ 7%] Building CXX object > Libs/vtkTeem/CMakeFiles/vtkTeem.dir/vtkTensorImplicitFunctionToFunctionSetTcl.o > [ 7%] Building CXX object > Libs/vtkTeem/CMakeFiles/vtkTeem.dir/vtkTensorMaskTcl.o > [ 8%] Building CXX object > Libs/vtkITK/CMakeFiles/vtkITK.dir/vtkITKIslandMath.o > [ 8%] Building CXX object > Libs/vtkTeem/CMakeFiles/vtkTeem.dir/vtkTensorRotateTcl.o > [ 8%] Building CXX object > Libs/vtkTeem/CMakeFiles/vtkTeem.dir/vtkImageLabelCombineTcl.o > make[3]: *** No rule to make target `/usr/lib/libmysqlclient.so', needed by > `bin/libvtkTeem.so.3.4.0'. Stop. > make[3]: *** Waiting for unfinished jobs.... > [ 9%] Building CXX object Libs/vtkTeem/CMakeFiles/vtkTeem.dir/vtkTeemInit.o > [ 9%] Building CXX object > Libs/vtkITK/CMakeFiles/vtkITK.dir/vtkITKArchetypeImageSeriesReaderTcl.o > make[2]: *** [Libs/vtkTeem/CMakeFiles/vtkTeem.dir/all] Error 2 > make[3]: Leaving directory > `/build/user-slicer_3.4.0~svn10438-7-amd64-uqn7r8/slicer-3.4.0~svn10438/DEB_build_shared' > [ 9%] [ 9%] Building CXX object > Libs/vtkITK/CMakeFiles/vtkITK.dir/vtkITKArchetypeImageSeriesScalarReaderTcl.o > Building CXX object > Libs/vtkITK/CMakeFiles/vtkITK.dir/vtkITKArchetypeImageSeriesVectorReaderFileTcl.o > In file included from /usr/include/InsightToolkit/Common/itkMath.h:28, > from /usr/include/InsightToolkit/Common/itkIndex.h:24, > from /usr/include/InsightToolkit/Common/itkImageRegion.h:25, > from /usr/include/InsightToolkit/Common/itkImageBase.h:25, > from /usr/include/InsightToolkit/Common/itkImage.h:20, > from > /build/user-slicer_3.4.0~svn10438-7-amd64-uqn7r8/slicer-3.4.0~svn10438/Libs/vtkITK/vtkITKIslandMath.cxx:23: > /usr/include/InsightToolkit/Common/itkConceptChecking.h: In member function > 'void itk::Concept::IsInteger<T>::Constraints::constraints() [with T = > double]': > /usr/include/InsightToolkit/Common/itkConceptChecking.h:686: instantiated > from 'itk::Concept::IsInteger<double>' > /usr/include/InsightToolkit/BasicFilters/itkConnectedComponentImageFilter.h:140: > instantiated from 'itk::ConnectedComponentImageFilter<itk::Image<double, > 3u>, itk::Image<double, 3u>, itk::Image<double, 3u> >' > /build/user-slicer_3.4.0~svn10438-7-amd64-uqn7r8/slicer-3.4.0~svn10438/Libs/vtkITK/vtkITKIslandMath.cxx:108: > instantiated from 'void vtkITKIslandMathExecute(vtkITKIslandMath*, > vtkImageData*, vtkImageData*, T*, T*) [with T = > vtkITKIslandMath::SimpleExecute::VTK_TT]' > /build/user-slicer_3.4.0~svn10438-7-amd64-uqn7r8/slicer-3.4.0~svn10438/Libs/vtkITK/vtkITKIslandMath.cxx:171: > instantiated from here > /usr/include/InsightToolkit/Common/itkConceptChecking.h:681: error: > conversion from 'itk::Concept::Detail::UniqueType_bool<true>' to non-scalar > type 'itk::Concept::Detail::UniqueType_bool<false>' requested > /usr/include/InsightToolkit/Common/itkConceptChecking.h: In member function > 'void itk::Concept::IsInteger<T>::Constraints::constraints() [with T = > float]': > /usr/include/InsightToolkit/Common/itkConceptChecking.h:686: instantiated > from 'itk::Concept::IsInteger<float>' > /usr/include/InsightToolkit/BasicFilters/itkConnectedComponentImageFilter.h:140: > instantiated from 'itk::ConnectedComponentImageFilter<itk::Image<float, > 3u>, itk::Image<float, 3u>, itk::Image<float, 3u> >' > /build/user-slicer_3.4.0~svn10438-7-amd64-uqn7r8/slicer-3.4.0~svn10438/Libs/vtkITK/vtkITKIslandMath.cxx:108: > instantiated from 'void vtkITKIslandMathExecute(vtkITKIslandMath*, > vtkImageData*, vtkImageData*, T*, T*) [with T = > vtkITKIslandMath::SimpleExecute::VTK_TT]' > /build/user-slicer_3.4.0~svn10438-7-amd64-uqn7r8/slicer-3.4.0~svn10438/Libs/vtkITK/vtkITKIslandMath.cxx:172: > instantiated from here > /usr/include/InsightToolkit/Common/itkConceptChecking.h:681: error: > conversion from 'itk::Concept::Detail::UniqueType_bool<true>' to non-scalar > type 'itk::Concept::Detail::UniqueType_bool<false>' requested > [ 9%] Building CXX object > Libs/vtkITK/CMakeFiles/vtkITK.dir/vtkITKArchetypeImageSeriesVectorReaderSeriesTcl.o > [ 9%] Building CXX object > Libs/vtkITK/CMakeFiles/vtkITK.dir/vtkITKImageWriterTcl.o > [ 9%] Building CXX object > Libs/vtkITK/CMakeFiles/vtkITK.dir/vtkITKImageToImageFilterTcl.o > [ 9%] Building CXX object > Libs/vtkITK/CMakeFiles/vtkITK.dir/vtkITKImageToImageFilter2DFFTcl.o > [ 9%] Building CXX object > Libs/vtkITK/CMakeFiles/vtkITK.dir/vtkITKImageToImageFilterFFTcl.o > [ 9%] [ 9%] Building CXX object > Libs/vtkITK/CMakeFiles/vtkITK.dir/vtkITKImageToImageFilterFULTcl.o > Building CXX object > Libs/vtkITK/CMakeFiles/vtkITK.dir/vtkITKImageToImageFilterULULTcl.o > make[3]: *** [Libs/vtkITK/CMakeFiles/vtkITK.dir/vtkITKIslandMath.o] Error 1 The full build log is available from: http://people.debian.org/~lucas/logs/2011/02/21/slicer_3.4.0~svn10438-7_lsid64.buildlog A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! About the archive rebuild: The rebuild was done on about 50 AMD64 nodes of the Grid'5000 platform, using a clean chroot. Internet was not accessible from the build systems. -- | Lucas Nussbaum | lu...@lucas-nussbaum.net http://www.lucas-nussbaum.net/ | | jabber: lu...@nussbaum.fr GPG: 1024D/023B3F4F | -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org
