Package: samtools Version: 0.1.12a-1 Tags: patch User: debian-...@lists.debian.org Usertags: ld-as-needed
patch at http://launchpadlibrarian.net/60144486/samtools_0.1.12a-1_0.1.12a-1ubuntu1.diff.gz gcc -g -Wall -O2 -I.. calDepth.c -o calDepth -lm -lz -L.. -lbam ../libbam.a(bgzf.o): In function `deflate_block': /build/buildd/samtools-0.1.12a/bgzf.c:272: undefined reference to `deflate' /build/buildd/samtools-0.1.12a/bgzf.c:274: undefined reference to `deflateEnd' /build/buildd/samtools-0.1.12a/bgzf.c:266: undefined reference to `deflateInit2_' /build/buildd/samtools-0.1.12a/bgzf.c:290: undefined reference to `deflateEnd' /build/buildd/samtools-0.1.12a/bgzf.c:306: undefined reference to `crc32' /build/buildd/samtools-0.1.12a/bgzf.c:307: undefined reference to `crc32' ../libbam.a(bgzf.o): In function `inflate_block': /build/buildd/samtools-0.1.12a/bgzf.c:340: undefined reference to `inflateInit2_' /build/buildd/samtools-0.1.12a/bgzf.c:345: undefined reference to `inflate' /build/buildd/samtools-0.1.12a/bgzf.c:347: undefined reference to `inflateEnd' /build/buildd/samtools-0.1.12a/bgzf.c:351: undefined reference to `inflateEnd' ../libbam.a(bam_import.o): In function `ks_getuntil': /build/buildd/samtools-0.1.12a/bam_import.c:17: undefined reference to `gzread' ../libbam.a(bam_import.o): In function `__bam_get_lines': /build/buildd/samtools-0.1.12a/bam_import.c:76: undefined reference to `gzdopen' /build/buildd/samtools-0.1.12a/bam_import.c:92: undefined reference to `gzclose' /build/buildd/samtools-0.1.12a/bam_import.c:76: undefined reference to `gzopen64' ../libbam.a(bam_import.o): In function `sam_header_read2': /build/buildd/samtools-0.1.12a/bam_import.c:126: undefined reference to `gzdopen' /build/buildd/samtools-0.1.12a/bam_import.c:126: undefined reference to `gzopen64' ../libbam.a(bam_import.o): In function `ks_getc': /build/buildd/samtools-0.1.12a/bam_import.c:17: undefined reference to `gzread' ../libbam.a(bam_import.o): In function `sam_header_read2': /build/buildd/samtools-0.1.12a/bam_import.c:147: undefined reference to `gzclose' ../libbam.a(bam_import.o): In function `sam_open': /build/buildd/samtools-0.1.12a/bam_import.c:442: undefined reference to `gzdopen' /build/buildd/samtools-0.1.12a/bam_import.c:442: undefined reference to `gzopen64' ../libbam.a(bam_import.o): In function `sam_close': /build/buildd/samtools-0.1.12a/bam_import.c:455: undefined reference to `gzclose' ../libbam.a(razf.o): In function `_razf_write': /build/buildd/samtools-0.1.12a/razf.c:197: undefined reference to `deflate' ../libbam.a(razf.o): In function `razf_open_w': /build/buildd/samtools-0.1.12a/razf.c:170: undefined reference to `deflateInit2_' /build/buildd/samtools-0.1.12a/razf.c:186: undefined reference to `deflateSetHeader' ../libbam.a(razf.o): In function `razf_open_r': /build/buildd/samtools-0.1.12a/razf.c:389: undefined reference to `inflateInit2_' /build/buildd/samtools-0.1.12a/razf.c:390: undefined reference to `inflateEnd' ../libbam.a(razf.o): In function `_razf_read': /build/buildd/samtools-0.1.12a/razf.c:602: undefined reference to `inflate' ../libbam.a(razf.o): In function `razf_flush': /build/buildd/samtools-0.1.12a/razf.c:230: undefined reference to `deflate' ../libbam.a(razf.o): In function `_razf_reset_read': /build/buildd/samtools-0.1.12a/razf.c:709: undefined reference to `inflateReset' /build/buildd/samtools-0.1.12a/razf.c:709: undefined reference to `inflateReset' ../libbam.a(razf.o): In function `razf_end_flush': /build/buildd/samtools-0.1.12a/razf.c:254: undefined reference to `deflate' ../libbam.a(razf.o): In function `razf_close': /build/buildd/samtools-0.1.12a/razf.c:800: undefined reference to `deflateEnd' /build/buildd/samtools-0.1.12a/razf.c:826: undefined reference to `inflateEnd' collect2: ld returned 1 exit status make[1]: *** [calDepth] Error 1 make[1]: Leaving directory `/build/buildd/samtools-0.1.12a/examples' make: *** [debian/stamp-makefile-check] Error 2 -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org
