tags 581237 patch thanks Hello,
On trečiadienis 12 Gegužė 2010 01:56:35 Dirk Eddelbuettel wrote: > it would seem that we can indeed lift this. Could you try a built on armel > with this restriction in debian/rules? Yeah, I tried it last night. I got expected results with the patch bug581237_system_lapack.diff applied: $ dpkg-deb -c r-base-core_2.11.0-2_armel.deb | grep /usr/lib/R/lib/ drwxr-xr-x root/root 0 2010-05-12 06:31 ./usr/lib/R/lib/ -rw-r--r-- root/root 3473984 2010-05-12 06:31 ./usr/lib/R/lib/libR.so Then I noticed that R built with -O0 -g0! In my opinion, that's really harsh for such a computationally intensive application like R (that's as far as I can tell from the description, I have no experience with R). So then I tried to build with bug581237_system_lapack_and_opt.diff applied (R got build with -O3 -g) and, voila, it succeeded as well. I think armel buildds are fast enough to handle those optimization flags nowadays. What is more, obviously, my original bug was fixed too: $ dpkg-deb -c r-base-core_2.11.0-2_armel.deb | grep /usr/lib/R/lib/ drwxr-xr-x root/root 0 2010-05-12 09:05 ./usr/lib/R/lib/ -rw-r--r-- root/root 2864348 2010-05-12 09:05 ./usr/lib/R/lib/libR.so So feel free to upload with either of these patches applied. It would be great if you did it soon to unblock kdeedu ASAP. I may also do a "NMU with maintainer permission" if you want me to. Just tell me which patch and changeset of the attached diffs you prefer. I may also replace removals from debian/rules with commenting out as you seem to do for other similar changes in debian/rules (if you wish). -- Modestas Vainius <modes...@vainius.eu>
diff -u r-base-2.11.0.o/debian/changelog r-base-2.11.0/debian/changelog --- r-base-2.11.0.o/debian/changelog 2010-05-12 00:51:30.000000000 +0000 +++ r-base-2.11.0/debian/changelog 2010-05-12 00:54:53.000000000 +0000 @@ -1,3 +1,9 @@ +r-base (2.11.0-2) UNRELEASED; urgency=low + + * Build with system blas and lapack on armel (Closes: #581237). + + -- Modestas Vainius <mo...@debian.org> Wed, 12 May 2010 00:53:00 +0000 + r-base (2.11.0-1) unstable; urgency=low * New upstream version released this morning @@ -2396,4 +2402,4 @@ * Initial release -- Douglas Bates <ba...@stat.wisc.edu> Tue, 23 Dec 1997 10:01:21 -0600 - \ No newline at end of file + diff -u r-base-2.11.0.o/debian/rules r-base-2.11.0/debian/rules --- r-base-2.11.0.o/debian/rules 2010-05-12 00:51:30.000000000 +0000 +++ r-base-2.11.0/debian/rules 2010-05-12 00:54:45.000000000 +0000 @@ -88,11 +88,6 @@ #compilerflags = -O1 #endif -# edd 14 Nov 2003 turn blas off on arm -ifeq ($(arch),arm) -atlas = --without-blas -endif - ## edd 09 Nov 2001 ia64 needs gcc-3.0, hppa gets it by default #ifeq ($(arch),ia64) #fortrancompiler = F77=g77-3.0 Common subdirectories: r-base-2.11.0.o/debian/unused and r-base-2.11.0/debian/unused
diff -u r-base-2.11.0.o/debian/changelog r-base-2.11.0.opt/debian/changelog --- r-base-2.11.0.o/debian/changelog 2010-05-12 00:51:30.000000000 +0000 +++ r-base-2.11.0.opt/debian/changelog 2010-05-12 01:51:07.000000000 +0000 @@ -1,3 +1,10 @@ +r-base (2.11.0-2) UNRELEASED; urgency=low + + * Build with system blas and lapack on armel (Closes: #581237). + * Enable optimizations and debugging symbols for default builds on armel. + + -- Modestas Vainius <mo...@debian.org> Wed, 12 May 2010 01:47:48 +0000 + r-base (2.11.0-1) unstable; urgency=low * New upstream version released this morning @@ -2396,4 +2403,4 @@ * Initial release -- Douglas Bates <ba...@stat.wisc.edu> Tue, 23 Dec 1997 10:01:21 -0600 - \ No newline at end of file + diff -u r-base-2.11.0.o/debian/rules r-base-2.11.0.opt/debian/rules --- r-base-2.11.0.o/debian/rules 2010-05-12 00:51:30.000000000 +0000 +++ r-base-2.11.0.opt/debian/rules 2010-05-12 01:50:37.000000000 +0000 @@ -88,11 +88,6 @@ #compilerflags = -O1 #endif -# edd 14 Nov 2003 turn blas off on arm -ifeq ($(arch),arm) -atlas = --without-blas -endif - ## edd 09 Nov 2001 ia64 needs gcc-3.0, hppa gets it by default #ifeq ($(arch),ia64) #fortrancompiler = F77=g77-3.0 @@ -106,13 +101,6 @@ optimflags = -O2 -ffunction-sections endif -## edd 20 Jun 2002 no optimisation or debugging on baby systems -## edd 02 Jun 2003 use this on arm only -#ifneq "$(findstring $(arch), m68k arm)" "" -ifneq "$(findstring $(arch), arm)" "" -optimflags = -O0 -g0 -endif - ## edd 04 Apr 2009 Alpha dies on deriv.c, trying will less optimisation ## edd 16 Apr 2009 commented-out as Kurt Roeckx applied a gcc patch #ifeq ($(arch),alpha) Common subdirectories: r-base-2.11.0.o/debian/unused and r-base-2.11.0.opt/debian/unused
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