Package: libinsighttoolkit3-dev Version: 3.16.0-1j Severity: normal
Attaching a patch that seems to work for me. It hardcodes the /usr/lib/jni path so it might fail on multilib systems when itk is installed for the non-default arch. I could run one of tha Java examples with patched InsightToolkit.jar Please consider applying the patch. Rebuilding insighttoolkit is quite time-consuming and the java bindings are justs small part of the build. Thanks Michal
diff -ur insighttoolkit-3.16.0/debian/changelog insighttoolkit-3.16.0.j/debian/changelog --- insighttoolkit-3.16.0/debian/changelog 2010-03-01 20:54:41.000000000 +0100 +++ insighttoolkit-3.16.0.j/debian/changelog 2010-03-02 01:13:53.000000000 +0100 @@ -1,3 +1,9 @@ +insighttoolkit (3.16.0-1j) unstable; urgency=low + + * enable Java + + -- Michal Suchanek <[email protected]> <[email protected]> Mon, 01 Mar 2010 00:34:37 +0100 + insighttoolkit (3.16.0-1) unstable; urgency=low * New upstream. Only in insighttoolkit-3.16.0.j/debian/: changelog~ diff -ur insighttoolkit-3.16.0/debian/CMakeCache.txt.debian insighttoolkit-3.16.0.j/debian/CMakeCache.txt.debian --- insighttoolkit-3.16.0/debian/CMakeCache.txt.debian 2010-03-01 20:54:41.000000000 +0100 +++ insighttoolkit-3.16.0.j/debian/CMakeCache.txt.debian 2010-03-01 00:34:32.000000000 +0100 @@ -34,7 +34,7 @@ CMAKE_SKIP_RPATH:BOOL=ON //Build cswig Java wrapper support -ITK_CSWIG_JAVA:BOOL=OFF +ITK_CSWIG_JAVA:BOOL=ON //Build cswig Python wrapper support (requires CableSwig). ITK_CSWIG_PYTHON:BOOL=ON diff -ur insighttoolkit-3.16.0/debian/control insighttoolkit-3.16.0.j/debian/control --- insighttoolkit-3.16.0/debian/control 2010-03-01 20:54:41.000000000 +0100 +++ insighttoolkit-3.16.0.j/debian/control 2010-03-02 00:51:17.000000000 +0100 @@ -10,7 +10,8 @@ python-support (>= 0.6.4), python-dev, libfftw3-dev, tcl8.4-dev, tk8.4-dev, uuid-dev, libgdcm2-dev, libjpeg62-dev, libfreetype6-dev, libopenjpeg-dev, graphviz, - libxext-dev, libxss-dev, libxft-dev, libpoppler-dev, libssl-dev + libxext-dev, libxss-dev, libxft-dev, libpoppler-dev, libssl-dev, + default-jdk (>= 1.6-34) XS-Python-Version: current Standards-Version: 3.8.0 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/insighttoolkit/trunk/?rev=0&sc=0 @@ -33,6 +35,23 @@ . This package contains the libraries needed to run ITK applications. +Package: insighttoolkit3-java +Section: java +Architecture: any +Depends: ${shlibs:Depends}, ${misc:Depends} +Description: Image processing toolkit for registration and segmentation - Java bindings + ITK is an open-source software toolkit for performing registration and + segmentation. Segmentation is the process of identifying and + classifying data found in a digitally sampled + representation. Typically the sampled representation is an image + acquired from such medical instrumentation as CT or MRI + scanners. Registration is the task of aligning or developing + correspondences between data. For example, in the medical + environment, a CT scan may be aligned with a MRI scan in order to + combine the information contained in both. + . + This package contains the Java language bindings for ITK. + Package: python-insighttoolkit3 Section: python Architecture: any @@ -53,7 +72,7 @@ . This package contains the Python language bindings for ITK. -Package: tcl8.4-insighttoolkit3 +Package: insighttoolkit3-tcl Section: interpreters Architecture: any Depends: ${shlibs:Depends}, ${misc:Depends}, tcl8.4, tk8.4 Only in insighttoolkit-3.16.0.j/debian/: control~ diff -ur insighttoolkit-3.16.0/debian/control.in insighttoolkit-3.16.0.j/debian/control.in --- insighttoolkit-3.16.0/debian/control.in 2010-03-01 20:54:41.000000000 +0100 +++ insighttoolkit-3.16.0.j/debian/control.in 2010-03-02 00:50:56.000000000 +0100 @@ -10,7 +10,8 @@ python-support (>= 0.6.4), python-dev, libfftw3-dev, tcl8.4-dev, tk8.4-dev, uuid-dev, libgdcm2-dev, libjpeg62-dev, libfreetype6-dev, libopenjpeg-dev, graphviz, - libxext-dev, libxss-dev, libxft-dev, libpoppler-dev, libssl-dev + libxext-dev, libxss-dev, libxft-dev, libpoppler-dev, libssl-dev, + default-jdk (>= 1.6-34) XS-Python-Version: current Standards-Version: 3.8.0 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/insighttoolkit/trunk/?rev=0&sc=0 @@ -33,6 +35,23 @@ . This package contains the libraries needed to run ITK applications. +Package: insighttool...@ver_major@S-java +Section: java +Architecture: any +Depends: ${shlibs:Depends}, ${misc:Depends} +Description: Image processing toolkit for registration and segmentation - Java bindings + ITK is an open-source software toolkit for performing registration and + segmentation. Segmentation is the process of identifying and + classifying data found in a digitally sampled + representation. Typically the sampled representation is an image + acquired from such medical instrumentation as CT or MRI + scanners. Registration is the task of aligning or developing + correspondences between data. For example, in the medical + environment, a CT scan may be aligned with a MRI scan in order to + combine the information contained in both. + . + This package contains the Java language bindings for ITK. + Package: python-insighttool...@ver_major@ Section: python Architecture: any @@ -53,7 +72,7 @@ . This package contains the Python language bindings for ITK. -Package: tcl8.4-insighttool...@ver_major@ +Package: insighttool...@ver_major@-tcl Section: interpreters Architecture: any Depends: ${shlibs:Depends}, ${misc:Depends}, tcl8.4, tk8.4 Only in insighttoolkit-3.16.0.j/debian/: control.in~ Only in insighttoolkit-3.16.0.j/debian/: java-insighttoolkit3 Only in insighttoolkit-3.16.0.j/debian/: java-insighttoolkit3.debhelper.log Only in insighttoolkit-3.16.0.j/debian/: libinsighttoolkit3.16.lintian-overrides Only in insighttoolkit-3.16.0.j/debian/: python-insighttoolkit3.lintian-overrides diff -ur insighttoolkit-3.16.0/debian/rules insighttoolkit-3.16.0.j/debian/rules --- insighttoolkit-3.16.0/debian/rules 2010-03-01 20:54:41.000000000 +0100 +++ insighttoolkit-3.16.0.j/debian/rules 2010-03-02 00:46:25.000000000 +0100 @@ -17,10 +17,13 @@ pkg_lib = libinsighttoolkit$(SOVERSION) pkg_dev = libinsighttoolkit$(VER_MAJOR)-dev +pkg_java = insighttoolkit$(VER_MAJOR)-java pkg_python = python-insighttoolkit$(VER_MAJOR) -pkg_tcl = tcl8.4-insighttoolkit$(VER_MAJOR) +pkg_tcl = insighttoolkit$(VER_MAJOR)-tcl pkg_examples = insighttoolkit$(VER_MAJOR)-examples +export JAVA_HOME=/usr/lib/jvm/default-java + PYVERS = $(shell pyversions -r debian/control) PYMODDIR = usr/lib/$(PYVERS)/site-packages PYEXTDIR = $(PYMODDIR) @@ -68,15 +71,19 @@ dh_lintian install/$(pkg_lib):: - dh_install -p$(pkg_lib) -XPython -XTcl debian/tmp/usr/lib/InsightToolkit/lib*.so.* usr/lib + dh_install -p$(pkg_lib) -XJava -XPython -XTcl debian/tmp/usr/lib/InsightToolkit/lib*.so.* usr/lib install/$(pkg_dev):: dh_installman -p$(pkg_dev) debian/insighttoolkit.3 dh_installdocs -p$(pkg_dev) Documentation/* - dh_install -p$(pkg_dev) -XPython -XTcl debian/tmp/usr/lib/InsightToolkit/lib*.so usr/lib + dh_install -p$(pkg_dev) -XJava -XPython -XTcl debian/tmp/usr/lib/InsightToolkit/lib*.so usr/lib dh_install -p$(pkg_dev) --autodest debian/tmp/usr/include/InsightToolkit/* dh_install -p$(pkg_dev) --autodest debian/tmp/usr/lib/InsightToolkit/*.cmake +install/$(pkg_java):: + dh_install -p$(pkg_java) debian/tmp/usr/lib/InsightToolkit/*Java.so* usr/lib/jni + dh_install -p$(pkg_java) debian/tmp/usr/lib/InsightToolkit/*.jar usr/share/java + install/$(pkg_python):: dh_install -p$(pkg_python) -XlibSwig debian/tmp/usr/lib/InsightToolkit/*Python.so* $(PYEXTDIR) dh_install -p$(pkg_python) debian/tmp/usr/lib/InsightToolkit/libSwigRuntimePython.so* usr/lib --- insighttoolkit-3.16.0/Wrapping/CSwig/Java/itkbase.java.in.orig 2005-04-27 16:45:25.000000000 +0200 +++ insighttoolkit-3.16.0/Wrapping/CSwig/Java/itkbase.java.in 2010-03-02 10:57:58.000000000 +0100 @@ -25,7 +25,7 @@ { private static String buildDir = "@ITK_JAVA_BUILD_DIR@"; private static String installDir = "@ITK_JAVA_INSTALL_DIR@"; - private static String libDir = "/InsightToolkit.jar must be in CLASSPATH"; + private static String libDir = "/usr/lib/jni"; static { @@ -48,7 +48,7 @@ } else { - libDir = dir.substring(0, index-1)+installDir; + //libDir = dir.substring(0, index-1)+installDir; break; } }
