Hi Dirk,
* Dirk Eddelbuettel <[EMAIL PROTECTED]> [061213 13:30]:
>
> Johannes,
>
> On 13 December 2006 at 10:54, Johannes Ranke wrote:
> | Package: r-cran-nlme
> | Version: 3.1.77-1
> | Severity: important
> |
> | After upgrading from sarge to etch:
> |
> | > library(nlme)
> | Fehler in library(nlme) : es gibt kein Paket 'nlme'
> |
> | (in English: there is no package 'nlme').
>
> Works for me on my testing box with 3.1.77-1 -- see below.
>
> Could you please grep for R_LIBS in
> /etc/R/
jazzy:/etc/R# grep R_LIBS *
Renviron:R_LIBS=${R_LIBS-'/usr/local/lib/R/site-library:/usr/lib/R/site-library:/usr/lib/R/library'}
Renviron.dpkg-dist:R_LIBS=${R_LIBS-'/usr/local/lib/R/site-library:/usr/lib/R/site-library:/usr/lib/R/library'}
> /usr/lib/R/etc/
jazzy:/usr/lib/R/etc# grep R_LIBS *
Renviron:R_LIBS=${R_LIBS-'/usr/local/lib/R/site-library:/usr/lib/R/site-library:/usr/lib/R/library'}
> and it should come up once in
???
I had the thought that the help index is not built in the postrm script
(there are a few lines commented out that would probably do this), but
this would not explain why the R packages can not be loaded...
> | In the HTML package index, several packages that are installed in
> | /usr/lib/R/library are not listed.
> |
> | I am only filing a bug on r-cran-nlme, although at least r-cran-vr and
> | some other r-cran packages are affected, too.
>
> Weird. Let's check -- we obviously need to fix this if it is a generic issue.
Yes, definitely. For now I can only use packages installed directly from
CRAN via install.packages() on this box, or use my Windows XP instance in
Xen which also works nicely ...
> | Let me know if I can help in the diagnosis.
>
> Here is what I get, cut & pasted from Emacs:
>
>
> R version 2.4.0 Patched (2006-11-25 r39997)
> Copyright (C) 2006 The R Foundation for Statistical Computing
> ISBN 3-900051-07-0
>
> R is free software and comes with ABSOLUTELY NO WARRANTY.
> You are welcome to redistribute it under certain conditions.
> Type 'license()' or 'licence()' for distribution details.
>
> R is a collaborative project with many contributors.
> Type 'contributors()' for more information and
> 'citation()' on how to cite R or R packages in publications.
>
> Type 'demo()' for some demos, 'help()' for on-line help, or
> 'help.start()' for an HTML browser interface to help.
> Type 'q()' to quit R.
>
> > if(!exists("baseenv", mode="function")) baseenv <- function() NULL
> options(STERM='iESS', editor='emacsclient')
> > library(nlme)
> > library(help=nlme)
>
> Information on package 'nlme'
>
> Description:
>
> Package: nlme
> Version: 3.1-77
> Date: 2006-09-28
> [....]
>
>
> Dirk
>
> |
> | Cheers,
> |
> | Johannes
> |
> |
> | -- System Information:
> | Debian Release: 4.0
> | APT prefers testing
> | APT policy: (500, 'testing'), (500, 'stable')
> | Architecture: amd64 (x86_64)
> | Shell: /bin/sh linked to /bin/bash
> | Kernel: Linux 2.6.18-3-xen-amd64
> | Locale: [EMAIL PROTECTED], [EMAIL PROTECTED] (charmap=ISO-8859-15)
> |
> | Versions of packages r-cran-nlme depends on:
> | ii libc6 2.3.6.ds1-8 GNU C Library: Shared libraries
> | ii r-base-core 2.4.0.20061125-1 GNU R core of statistical
> computin
> | ii r-cran-lattice 0.14-13-1 GNU R package for 'Trellis'
> graphi
> |
> | r-cran-nlme recommends no packages.
> |
> | -- no debconf information
> |
>
> --
> Hell, there are no rules here - we're trying to accomplish something.
> -- Thomas A. Edison
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