Package: src:pytorch-geometric Version: 2.8.0-1 Severity: serious Tags: ftbfs forky sid
Dear maintainer: During a rebuild of all packages in unstable, this package failed to build. Below you will find the last part of the build log (probably the most relevant part, but not necessarily). If required, the full build log is available here: https://people.debian.org/~sanvila/build-logs/202608/ About the archive rebuild: The build was made on virtual machines from AWS, using sbuild and a reduced chroot with only build-essential packages. If you cannot reproduce the bug please contact me privately, as I am willing to provide ssh access to a virtual machine where the bug is fully reproducible. If this is really a bug in one of the build-depends, please use reassign and add an affects on src:pytorch-geometric, so that this is still visible in the BTS web page for this package. Thanks. -------------------------------------------------------------------------------- [...] debian/rules clean dh clean --buildsystem pybuild dh_auto_clean -O--buildsystem=pybuild dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild dh_auto_build -O--buildsystem=pybuild I: pybuild plugin_pyproject:142: Building wheel for python3.14 with "build" module I: pybuild base:385: python3.14 -m build --skip-dependency-check --no-isolation --wheel --outdir /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric * Building wheel... Successfully built torch_geometric-2.8.0-py3-none-any.whl [... snipped ...] self._context.run(self.run) ~~~~~~~~~~~~~~~~~^^^^^^^^^^ File "/usr/lib/python3.14/threading.py", line 1024, in run self._target(*self._args, **self._kwargs) ~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3.14/multiprocessing/queues.py", line 289, in _feed queue_sem.release() ~~~~~~~~~~~~~~~~~^^ ValueError: semaphore or lock released too many times Enable tracemalloc to get traceback where the object was allocated. See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. warnings.warn(pytest.PytestUnhandledThreadExceptionWarning(msg)) test/nn/aggr/test_multi.py: 10 warnings test/nn/dense/test_linear.py: 1 warning test/nn/test_sequential.py: 1 warning /usr/lib/python3.14/ast.py:506: UserWarning: The TorchScript type system doesn't support instance-level annotations on empty non-base types in `__init__`. Instead, either 1) use a type annotation in the class body, or 2) wrap the type in `torch.jit.Attribute`. return visitor(node) test/nn/dense/test_linear.py::test_hetero_linear_amp[None-cpu] test/nn/dense/test_linear.py::test_hetero_linear_amp[True-cpu] test/nn/dense/test_linear.py::test_hetero_linear_amp[False-cpu] /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/nn/dense/test_linear.py:173: UserWarning: CUDA is not available or torch_xla is imported. Disabling autocast. with torch.amp.autocast('cuda'): test/profile/test_profiler.py::test_profiler[cpu] /usr/lib/python3/dist-packages/torch/profiler/profiler.py:272: UserWarning: Warning: Profiler clears events at the end of each cycle.Only events from the current cycle will be reported.To keep events across cycles, set acc_events=True. _warn_once( test/test_edge_index.py::test_data_loader[True-2-int64] test/test_edge_index.py::test_data_loader[True-2-int32] test/test_hash_tensor.py::test_data_loader[True-2] test/test_index.py::test_data_loader[True-2-int64] test/test_index.py::test_data_loader[True-2-int32] /usr/lib/python3/dist-packages/torch/utils/data/dataloader.py:1095: UserWarning: 'pin_memory' argument is set as true but no accelerator is found, then device pinned memory won't be used. super().__init__(loader) test/test_onnx.py::test_safe_onnx_export_with_skip_on_error /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:120: UserWarning: Encountered known ONNX serialization issue (Exception). This is likely the allowzero boolean attribute bug. Attempting workaround... result = safe_onnx_export(model, (x, ), f.name, test/test_onnx.py::test_safe_onnx_export_with_skip_on_error /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:120: UserWarning: Retrying ONNX export with opset_version=17 result = safe_onnx_export(model, (x, ), f.name, test/test_onnx.py::test_safe_onnx_export_with_skip_on_error /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:120: UserWarning: Retrying ONNX export with opset_version=16 result = safe_onnx_export(model, (x, ), f.name, test/test_onnx.py::test_safe_onnx_export_with_skip_on_error /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:120: UserWarning: Retrying ONNX export with opset_version=15 result = safe_onnx_export(model, (x, ), f.name, test/test_onnx.py::test_safe_onnx_export_with_skip_on_error /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:120: UserWarning: Retrying ONNX export with opset_version=14 result = safe_onnx_export(model, (x, ), f.name, test/test_onnx.py::test_safe_onnx_export_with_skip_on_error /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:120: UserWarning: Retrying ONNX export with opset_version=13 result = safe_onnx_export(model, (x, ), f.name, test/test_onnx.py::test_safe_onnx_export_with_skip_on_error /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:120: UserWarning: Retrying ONNX export with opset_version=11 result = safe_onnx_export(model, (x, ), f.name, test/test_onnx.py::test_safe_onnx_export_with_skip_on_error /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:120: UserWarning: Retrying ONNX export with legacy settings (dynamo=False, opset_version=11) result = safe_onnx_export(model, (x, ), f.name, test/test_onnx.py::test_safe_onnx_export_with_skip_on_error /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:120: UserWarning: Retrying ONNX export with minimal settings as last resort result = safe_onnx_export(model, (x, ), f.name, test/test_onnx.py::test_safe_onnx_export_with_skip_on_error /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:120: UserWarning: ONNX export skipped due to known upstream issue (onnx_ir.serde.SerdeError). This is caused by a bug in the onnx_ir package where boolean allowzero attributes cannot be serialized. All workarounds failed. Consider updating packages: pip install --upgrade onnx onnxscript onnx_ir result = safe_onnx_export(model, (x, ), f.name, test/test_onnx.py::test_serde_error_patterns /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:156: UserWarning: Encountered known ONNX serialization issue (Exception). This is likely the allowzero boolean attribute bug. Attempting workaround... result = safe_onnx_export(model, (x, ), f.name, test/test_onnx.py::test_serde_error_patterns /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:156: UserWarning: Retrying ONNX export with opset_version=17 result = safe_onnx_export(model, (x, ), f.name, test/test_onnx.py::test_serde_error_patterns /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:156: UserWarning: Retrying ONNX export with opset_version=16 result = safe_onnx_export(model, (x, ), f.name, test/test_onnx.py::test_serde_error_patterns /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:156: UserWarning: Retrying ONNX export with opset_version=15 result = safe_onnx_export(model, (x, ), f.name, test/test_onnx.py::test_serde_error_patterns /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:156: UserWarning: Retrying ONNX export with opset_version=14 result = safe_onnx_export(model, (x, ), f.name, test/test_onnx.py::test_serde_error_patterns /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:156: UserWarning: Retrying ONNX export with opset_version=13 result = safe_onnx_export(model, (x, ), f.name, test/test_onnx.py::test_serde_error_patterns /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:156: UserWarning: Retrying ONNX export with opset_version=11 result = safe_onnx_export(model, (x, ), f.name, test/test_onnx.py::test_serde_error_patterns /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:156: UserWarning: Retrying ONNX export with legacy settings (dynamo=False, opset_version=11) result = safe_onnx_export(model, (x, ), f.name, test/test_onnx.py::test_serde_error_patterns /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:156: UserWarning: Retrying ONNX export with minimal settings as last resort result = safe_onnx_export(model, (x, ), f.name, test/test_onnx.py::test_serde_error_patterns /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:156: UserWarning: ONNX export skipped due to known upstream issue (onnx_ir.serde.SerdeError). This is caused by a bug in the onnx_ir package where boolean allowzero attributes cannot be serialized. All workarounds failed. Consider updating packages: pip install --upgrade onnx onnxscript onnx_ir result = safe_onnx_export(model, (x, ), f.name, test/test_onnx.py::test_dynamo_fallback /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:219: UserWarning: Encountered known ONNX serialization issue (Exception). This is likely the allowzero boolean attribute bug. Attempting workaround... result = safe_onnx_export(model, (x, ), f.name, dynamo=True) test/test_onnx.py::test_dynamo_fallback /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:219: UserWarning: Retrying ONNX export with dynamo=False as workaround result = safe_onnx_export(model, (x, ), f.name, dynamo=True) test/test_onnx.py::test_opset_fallback /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:254: UserWarning: Encountered known ONNX serialization issue (Exception). This is likely the allowzero boolean attribute bug. Attempting workaround... result = safe_onnx_export(model, (x, ), f.name, test/test_onnx.py::test_opset_fallback /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:254: UserWarning: Retrying ONNX export with opset_version=17 result = safe_onnx_export(model, (x, ), f.name, test/test_onnx.py::test_all_strategies_fail /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:286: UserWarning: Encountered known ONNX serialization issue (Exception). This is likely the allowzero boolean attribute bug. Attempting workaround... safe_onnx_export(model, (x, ), f.name, skip_on_error=False) test/test_onnx.py::test_all_strategies_fail /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:286: UserWarning: Retrying ONNX export with opset_version=17 safe_onnx_export(model, (x, ), f.name, skip_on_error=False) test/test_onnx.py::test_all_strategies_fail /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:286: UserWarning: Retrying ONNX export with opset_version=16 safe_onnx_export(model, (x, ), f.name, skip_on_error=False) test/test_onnx.py::test_all_strategies_fail /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:286: UserWarning: Retrying ONNX export with opset_version=15 safe_onnx_export(model, (x, ), f.name, skip_on_error=False) test/test_onnx.py::test_all_strategies_fail /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:286: UserWarning: Retrying ONNX export with opset_version=14 safe_onnx_export(model, (x, ), f.name, skip_on_error=False) test/test_onnx.py::test_all_strategies_fail /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:286: UserWarning: Retrying ONNX export with opset_version=13 safe_onnx_export(model, (x, ), f.name, skip_on_error=False) test/test_onnx.py::test_all_strategies_fail /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:286: UserWarning: Retrying ONNX export with opset_version=11 safe_onnx_export(model, (x, ), f.name, skip_on_error=False) test/test_onnx.py::test_all_strategies_fail /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:286: UserWarning: Retrying ONNX export with legacy settings (dynamo=False, opset_version=11) safe_onnx_export(model, (x, ), f.name, skip_on_error=False) test/test_onnx.py::test_all_strategies_fail /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:286: UserWarning: Retrying ONNX export with minimal settings as last resort safe_onnx_export(model, (x, ), f.name, skip_on_error=False) test/test_onnx.py::test_all_strategies_fail /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:289: UserWarning: Encountered known ONNX serialization issue (Exception). This is likely the allowzero boolean attribute bug. Attempting workaround... result = safe_onnx_export(model, (x, ), f.name, test/test_onnx.py::test_all_strategies_fail /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:289: UserWarning: Retrying ONNX export with opset_version=17 result = safe_onnx_export(model, (x, ), f.name, test/test_onnx.py::test_all_strategies_fail /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:289: UserWarning: Retrying ONNX export with opset_version=16 result = safe_onnx_export(model, (x, ), f.name, test/test_onnx.py::test_all_strategies_fail /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:289: UserWarning: Retrying ONNX export with opset_version=15 result = safe_onnx_export(model, (x, ), f.name, test/test_onnx.py::test_all_strategies_fail /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:289: UserWarning: Retrying ONNX export with opset_version=14 result = safe_onnx_export(model, (x, ), f.name, test/test_onnx.py::test_all_strategies_fail /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:289: UserWarning: Retrying ONNX export with opset_version=13 result = safe_onnx_export(model, (x, ), f.name, test/test_onnx.py::test_all_strategies_fail /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:289: UserWarning: Retrying ONNX export with opset_version=11 result = safe_onnx_export(model, (x, ), f.name, test/test_onnx.py::test_all_strategies_fail /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:289: UserWarning: Retrying ONNX export with legacy settings (dynamo=False, opset_version=11) result = safe_onnx_export(model, (x, ), f.name, test/test_onnx.py::test_all_strategies_fail /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:289: UserWarning: Retrying ONNX export with minimal settings as last resort result = safe_onnx_export(model, (x, ), f.name, test/test_onnx.py::test_all_strategies_fail /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:289: UserWarning: ONNX export skipped due to known upstream issue (onnx_ir.serde.SerdeError). This is caused by a bug in the onnx_ir package where boolean allowzero attributes cannot be serialized. All workarounds failed. Consider updating packages: pip install --upgrade onnx onnxscript onnx_ir result = safe_onnx_export(model, (x, ), f.name, test/test_onnx.py::test_pytest_environment_detection /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:318: UserWarning: Encountered known ONNX serialization issue (Exception). This is likely the allowzero boolean attribute bug. Attempting workaround... safe_onnx_export(model, (x, ), f.name, test/test_onnx.py::test_pytest_environment_detection /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:318: UserWarning: Retrying ONNX export with opset_version=17 safe_onnx_export(model, (x, ), f.name, test/test_onnx.py::test_pytest_environment_detection /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:318: UserWarning: Retrying ONNX export with opset_version=16 safe_onnx_export(model, (x, ), f.name, test/test_onnx.py::test_pytest_environment_detection /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:318: UserWarning: Retrying ONNX export with opset_version=15 safe_onnx_export(model, (x, ), f.name, test/test_onnx.py::test_pytest_environment_detection /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:318: UserWarning: Retrying ONNX export with opset_version=14 safe_onnx_export(model, (x, ), f.name, test/test_onnx.py::test_pytest_environment_detection /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:318: UserWarning: Retrying ONNX export with opset_version=13 safe_onnx_export(model, (x, ), f.name, test/test_onnx.py::test_pytest_environment_detection /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:318: UserWarning: Retrying ONNX export with opset_version=11 safe_onnx_export(model, (x, ), f.name, test/test_onnx.py::test_pytest_environment_detection /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:318: UserWarning: Retrying ONNX export with legacy settings (dynamo=False, opset_version=11) safe_onnx_export(model, (x, ), f.name, test/test_onnx.py::test_pytest_environment_detection /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build/test/test_onnx.py:318: UserWarning: Retrying ONNX export with minimal settings as last resort safe_onnx_export(model, (x, ), f.name, test/test_warnings.py::test_warning_cache /usr/lib/python3/dist-packages/pluggy/_callers.py:121: UserWarning: test res = hook_impl.function(*args) test/test_warnings.py::test_warning_cache /usr/lib/python3/dist-packages/pluggy/_callers.py:121: UserWarning: test2 res = hook_impl.function(*args) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html [36m[1m=========================== short test summary info ============================[0m [31mFAILED[0m test/loader/test_dataloader.py::[1mtest_dataloader_on_disk_dataset[2][0m - TypeError: cannot pickle 'sqlite3.Connection' object when serializing dict item '_connection' when serializing torch_geometric.data.database.SQLiteDatabase state when serializing torch_geometric.data.database.SQLiteDatabase object when serializing dict item '_db' when serializing torch_geometric.data.on_disk_dataset.OnDiskDataset state when serializing torch_geometric.data.on_disk_dataset.OnDiskDataset object when serializing tuple item 1 when serializing dict item '_args' when serializing multiprocessing.context.Process state when serializing multiprocessing.context.Process object [31mFAILED[0m test/nn/conv/utils/test_gnn_cheatsheet.py::[1mtest_gnn_cheatsheet[0m - AssertionError: assert False + where False = <function supports_bipartite_graphs at 0x7fedbe645a60>('SAGEConv') + where <function supports_bipartite_graphs at 0x7fedbe645a60> = utils.supports_bipartite_graphs [31mFAILED[0m test/test_config_store.py::[1mtest_to_dataclass[0m - AttributeError: readonly attribute [31mFAILED[0m test/test_config_store.py::[1mtest_register[0m - AttributeError: readonly attribute [31mFAILED[0m test/test_config_store.py::[1mtest_fill_config_store[0m - AttributeError: readonly attribute [31m= [31m[1m5 failed[0m, [32m6001 passed[0m, [33m862 skipped[0m, [33m263 deselected[0m, [33m1 xfailed[0m, [33m1 xpassed[0m, [33m131 warnings[0m[31m in 149.14s (0:02:29)[0m[31m =[0m E: pybuild pybuild:485: test: plugin pyproject failed with: exit code=1: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_torch-geometric/build; python3.14 -m pytest -k 'not test_citeseer and not test_enzymes and not test_mutag and not _on_cora and not test_asap and not test_feature_store and not test_two_hop and not test_graph_unet and not test_spspmm and not test_add_metapaths and not test_type_repr and not test_protein_mpnn_dataset and not neighbor_sampler' dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.14 --parallel=2 returned exit code 13 make: *** [debian/rules:21: binary] Error 25 dpkg-buildpackage: error: debian/rules binary subprocess failed with exit status 2 --------------------------------------------------------------------------------
