Source: biomaj3-download Version: 3.2.12-2 Severity: serious Justification: FTBFS Tags: forky sid ftbfs User: [email protected] Usertags: ftbfs-20250809 ftbfs-forky
Hi, During a rebuild of all packages in sid, your package failed to build on amd64. The full build log is available from: http://qa-logs.debian.net/2025/08/09/biomaj3-download_3.2.12-2_unstable.log All bugs filed during this archive rebuild are listed at: https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20250809;[email protected] or: https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20250809&[email protected]&allbugs=1&cseverity=1&ctags=1&caffected=1#results A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! If you reassign this bug to another package, please mark it as 'affects'-ing this package. See https://www.debian.org/Bugs/server-control#affects If you fail to reproduce this, please provide a build log and diff it with mine so that we can identify if something relevant changed in the meantime. -- Relevant part of the build log (hopefully): > make[1]: Entering directory '/build/reproducible-path/biomaj3-download-3.2.12' > LOCAL_IRODS=0 NETWORK=0 python3 -m pytest -v tests/biomaj_tests.py > ============================= test session starts > ============================== > platform linux -- Python 3.13.5, pytest-8.3.5, pluggy-1.5.0 -- > /usr/bin/python3 > cachedir: .pytest_cache > rootdir: /build/reproducible-path/biomaj3-download-3.2.12 > plugins: typeguard-4.4.2 > collecting ... collected 0 items / 1 error > > ==================================== ERRORS > ==================================== > ____________________ ERROR collecting tests/biomaj_tests.py > ____________________ > ImportError while importing test module > '/build/reproducible-path/biomaj3-download-3.2.12/tests/biomaj_tests.py'. > Hint: make sure your test modules/packages have valid Python names. > Traceback: > /usr/lib/python3.13/importlib/__init__.py:88: in import_module > return _bootstrap._gcd_import(name[level:], package, level) > tests/biomaj_tests.py:21: in <module> > from biomaj_core.config import BiomajConfig > /usr/lib/python3/dist-packages/biomaj_core/config.py:10: in <module> > from biomaj_core.bmajindex import BmajIndex > /usr/lib/python3/dist-packages/biomaj_core/bmajindex.py:5: in <module> > from elasticsearch import Elasticsearch > /usr/lib/python3/dist-packages/elasticsearch/__init__.py:32: in <module> > raise ImportError( > E ImportError: An incompatible version of elastic-transport is installed. > Must be between v8.0.0 and v9.0.0. Install the correct version with the > following command: $ python -m pip install 'elastic-transport>=8, <9' > =============================== warnings summary > =============================== > tests/biomaj_tests.py:453 > /build/reproducible-path/biomaj3-download-3.2.12/tests/biomaj_tests.py:453: > SyntaxWarning: invalid escape sequence '\s' > > "<a[\s]+href=\"([\w\-\.]+\">[\w\-\.]+.tar.gz)<\/a>[\s]+([0-9]{2}-[A-Za-z]{3}-[0-9]{4}[\s][0-9]{2}:[0-9]{2})[\s]+([0-9]+[A-Za-z])", > > tests/biomaj_tests.py:454 > /build/reproducible-path/biomaj3-download-3.2.12/tests/biomaj_tests.py:454: > SyntaxWarning: invalid escape sequence '\s' > > "<a[\s]+href=\"[\w\-\.]+\">([\w\-\.]+.tar.gz)<\/a>[\s]+([0-9]{2}-[A-Za-z]{3}-[0-9]{4}[\s][0-9]{2}:[0-9]{2})[\s]+([0-9]+[A-Za-z])", > > ../../../usr/lib/python3/dist-packages/biomaj_core/utils.py:11 > /usr/lib/python3/dist-packages/biomaj_core/utils.py:11: DeprecationWarning: > pkg_resources is deprecated as an API. See > https://setuptools.pypa.io/en/latest/pkg_resources.html > import pkg_resources > > -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html > =========================== short test summary info > ============================ > ERROR tests/biomaj_tests.py > !!!!!!!!!!!!!!!!!!!! Interrupted: 1 error during collection > !!!!!!!!!!!!!!!!!!!! > ========================= 3 warnings, 1 error in 0.37s > ========================= > make[1]: *** [debian/rules:29: override_dh_auto_test] Error 2
