Source: ivar Version: 1.4.4+dfsg-1 Severity: minor Tags: trixie sid ftbfs User: [email protected] Usertags: ftbfs-shuffle
Hi, GNU Make now has a --shuffle option that simulates non-deterministic ordering of target prerequisites. See https://trofi.github.io/posts/238-new-make-shuffle-mode.html and also previous work in Debian by Santiago Vila: https://people.debian.org/~sanvila/make-shuffle/ This package fails to build with make --shuffle=reverse. This is likely to be caused by a missing dependency in debian/rules or an upstream Makefile. More information about this mass bug filing is available at https://wiki.debian.org/qa.debian.org/FTBFS/Shuffle Relevant part (hopefully): > make[5]: Entering directory '/build/reproducible-path/ivar-1.4.4+dfsg/tests' > Makefile:1268: update target 'check_strand_variants.log' due to: target does > not exist > p='check_strand_variants'; \ > b='check_strand_variants'; \ > case $- in *e*) set +e;; esac; srcdirstrip=`echo "." | sed 's|.|.|g'`; case > $p in ./*) f=`echo "$p" | sed "s|^$srcdirstrip/||"`;; *) f=$p;; esac; { mgn= > red= grn= lgn= blu= brg= std=; am__color_tests=no; if test "X" = Xno; then > am__color_tests=no; elif test "X" = Xalways; then am__color_tests=yes; elif > test "X$TERM" != Xdumb && { test -t 1; } 2>/dev/null; then > am__color_tests=yes; fi; if test $am__color_tests = yes; then red='[0;31m'; > grn='[0;32m'; lgn='[1;32m'; blu='[1;34m'; mgn='[0;35m'; brg='[1m'; > std='[m'; fi; }; srcdir=.; export srcdir; case "check_strand_variants.log" > in */*) am__odir=`echo "./check_strand_variants.log" | sed 's|/[^/]*$||'`;; > *) am__odir=.;; esac; test "x$am__odir" = x"." || test -d "$am__odir" || > /usr/bin/mkdir -p "$am__odir" || exit $?; if test -f "./$f"; then dir=./; > elif test -f "$f"; then dir=; else dir="./"; fi; tst=$dir$f; > log='check_strand_variants.log'; if test -n ''; then > am__collect_skipped_logs='--collect-skipped-logs no'; else > am__collect_skipped_logs=''; fi; if test -n ''; then > am__enable_hard_errors=no; else am__enable_hard_errors=yes; fi; case " " in > *[\ \ ]$f[\ \ ]* | *[\ \ ]$dir$f[\ \ ]*) > am__expect_failure=yes;; *) am__expect_failure=no;; esac; /bin/bash > ../test-driver --test-name "$f" \ > --log-file $b.log --trs-file $b.trs \ > --color-tests "$am__color_tests" $am__collect_skipped_logs > --enable-hard-errors "$am__enable_hard_errors" --expect-failure > "$am__expect_failure" -- \ > "$tst" > PASS: check_strand_variants > Makefile:1261: update target 'check_quality_trim_unpaired.log' due to: target > does not exist > p='check_quality_trim_unpaired'; \ > b='check_quality_trim_unpaired'; \ > case $- in *e*) set +e;; esac; srcdirstrip=`echo "." | sed 's|.|.|g'`; case > $p in ./*) f=`echo "$p" | sed "s|^$srcdirstrip/||"`;; *) f=$p;; esac; { mgn= > red= grn= lgn= blu= brg= std=; am__color_tests=no; if test "X" = Xno; then > am__color_tests=no; elif test "X" = Xalways; then am__color_tests=yes; elif > test "X$TERM" != Xdumb && { test -t 1; } 2>/dev/null; then > am__color_tests=yes; fi; if test $am__color_tests = yes; then red='[0;31m'; > grn='[0;32m'; lgn='[1;32m'; blu='[1;34m'; mgn='[0;35m'; brg='[1m'; > std='[m'; fi; }; srcdir=.; export srcdir; case > "check_quality_trim_unpaired.log" in */*) am__odir=`echo > "./check_quality_trim_unpaired.log" | sed 's|/[^/]*$||'`;; *) am__odir=.;; > esac; test "x$am__odir" = x"." || test -d "$am__odir" || /usr/bin/mkdir -p > "$am__odir" || exit $?; if test -f "./$f"; then dir=./; elif test -f "$f"; > then dir=; else dir="./"; fi; tst=$dir$f; > log='check_quality_trim_unpaired.log'; if test -n ''; then > am__collect_skipped_logs='--collect-skipped-logs no'; else > am__collect_skipped_logs=''; fi; if test -n ''; then > am__enable_hard_errors=no; else am__enable_hard_errors=yes; fi; case " " in > *[\ \ ]$f[\ \ ]* | *[\ \ ]$dir$f[\ \ ]*) > am__expect_failure=yes;; *) am__expect_failure=no;; esac; /bin/bash > ../test-driver --test-name "$f" \ > --log-file $b.log --trs-file $b.trs \ > --color-tests "$am__color_tests" $am__collect_skipped_logs > --enable-hard-errors "$am__enable_hard_errors" --expect-failure > "$am__expect_failure" -- \ > "$tst" > PASS: check_quality_trim_unpaired > Makefile:1254: update target 'check_consensus_min_insert_threshold.log' due > to: target does not exist > p='check_consensus_min_insert_threshold'; \ > b='check_consensus_min_insert_threshold'; \ > case $- in *e*) set +e;; esac; srcdirstrip=`echo "." | sed 's|.|.|g'`; case > $p in ./*) f=`echo "$p" | sed "s|^$srcdirstrip/||"`;; *) f=$p;; esac; { mgn= > red= grn= lgn= blu= brg= std=; am__color_tests=no; if test "X" = Xno; then > am__color_tests=no; elif test "X" = Xalways; then am__color_tests=yes; elif > test "X$TERM" != Xdumb && { test -t 1; } 2>/dev/null; then > am__color_tests=yes; fi; if test $am__color_tests = yes; then red='[0;31m'; > grn='[0;32m'; lgn='[1;32m'; blu='[1;34m'; mgn='[0;35m'; brg='[1m'; > std='[m'; fi; }; srcdir=.; export srcdir; case > "check_consensus_min_insert_threshold.log" in */*) am__odir=`echo > "./check_consensus_min_insert_threshold.log" | sed 's|/[^/]*$||'`;; *) > am__odir=.;; esac; test "x$am__odir" = x"." || test -d "$am__odir" || > /usr/bin/mkdir -p "$am__odir" || exit $?; if test -f "./$f"; then dir=./; > elif test -f "$f"; then dir=; else dir="./"; fi; tst=$dir$f; > log='check_consensus_min_insert_threshold.log'; if test -n ''; then > am__collect_skipped_logs='--collect-skipped-logs no'; else > am__collect_skipped_logs=''; fi; if test -n ''; then > am__enable_hard_errors=no; else am__enable_hard_errors=yes; fi; case " " in > *[\ \ ]$f[\ \ ]* | *[\ \ ]$dir$f[\ \ ]*) am__expect_failure=yes;; > *) am__expect_failure=no;; esac; /bin/bash ../test-driver --test-name "$f" \ > --log-file $b.log --trs-file $b.trs \ > --color-tests "$am__color_tests" $am__collect_skipped_logs > --enable-hard-errors "$am__enable_hard_errors" --expect-failure > "$am__expect_failure" -- \ > "$tst" > PASS: check_consensus_min_insert_threshold > Makefile:1247: update target 'check_amplicon_search.log' due to: target does > not exist > p='check_amplicon_search'; \ > b='check_amplicon_search'; \ > case $- in *e*) set +e;; esac; srcdirstrip=`echo "." | sed 's|.|.|g'`; case > $p in ./*) f=`echo "$p" | sed "s|^$srcdirstrip/||"`;; *) f=$p;; esac; { mgn= > red= grn= lgn= blu= brg= std=; am__color_tests=no; if test "X" = Xno; then > am__color_tests=no; elif test "X" = Xalways; then am__color_tests=yes; elif > test "X$TERM" != Xdumb && { test -t 1; } 2>/dev/null; then > am__color_tests=yes; fi; if test $am__color_tests = yes; then red='[0;31m'; > grn='[0;32m'; lgn='[1;32m'; blu='[1;34m'; mgn='[0;35m'; brg='[1m'; > std='[m'; fi; }; srcdir=.; export srcdir; case "check_amplicon_search.log" > in */*) am__odir=`echo "./check_amplicon_search.log" | sed 's|/[^/]*$||'`;; > *) am__odir=.;; esac; test "x$am__odir" = x"." || test -d "$am__odir" || > /usr/bin/mkdir -p "$am__odir" || exit $?; if test -f "./$f"; then dir=./; > elif test -f "$f"; then dir=; else dir="./"; fi; tst=$dir$f; > log='check_amplicon_search.log'; if test -n ''; then > am__collect_skipped_logs='--collect-skipped-logs no'; else > am__collect_skipped_logs=''; fi; if test -n ''; then > am__enable_hard_errors=no; else am__enable_hard_errors=yes; fi; case " " in > *[\ \ ]$f[\ \ ]* | *[\ \ ]$dir$f[\ \ ]*) > am__expect_failure=yes;; *) am__expect_failure=no;; esac; /bin/bash > ../test-driver --test-name "$f" \ > --log-file $b.log --trs-file $b.trs \ > --color-tests "$am__color_tests" $am__collect_skipped_logs > --enable-hard-errors "$am__enable_hard_errors" --expect-failure > "$am__expect_failure" -- \ > "$tst" > PASS: check_amplicon_search > Makefile:1240: update target 'check_interval_tree.log' due to: target does > not exist > p='check_interval_tree'; \ > b='check_interval_tree'; \ > case $- in *e*) set +e;; esac; srcdirstrip=`echo "." | sed 's|.|.|g'`; case > $p in ./*) f=`echo "$p" | sed "s|^$srcdirstrip/||"`;; *) f=$p;; esac; { mgn= > red= grn= lgn= blu= brg= std=; am__color_tests=no; if test "X" = Xno; then > am__color_tests=no; elif test "X" = Xalways; then am__color_tests=yes; elif > test "X$TERM" != Xdumb && { test -t 1; } 2>/dev/null; then > am__color_tests=yes; fi; if test $am__color_tests = yes; then red='[0;31m'; > grn='[0;32m'; lgn='[1;32m'; blu='[1;34m'; mgn='[0;35m'; brg='[1m'; > std='[m'; fi; }; srcdir=.; export srcdir; case "check_interval_tree.log" in > */*) am__odir=`echo "./check_interval_tree.log" | sed 's|/[^/]*$||'`;; *) > am__odir=.;; esac; test "x$am__odir" = x"." || test -d "$am__odir" || > /usr/bin/mkdir -p "$am__odir" || exit $?; if test -f "./$f"; then dir=./; > elif test -f "$f"; then dir=; else dir="./"; fi; tst=$dir$f; > log='check_interval_tree.log'; if test -n ''; then > am__collect_skipped_logs='--collect-skipped-logs no'; else > am__collect_skipped_logs=''; fi; if test -n ''; then > am__enable_hard_errors=no; else am__enable_hard_errors=yes; fi; case " " in > *[\ \ ]$f[\ \ ]* | *[\ \ ]$dir$f[\ \ ]*) > am__expect_failure=yes;; *) am__expect_failure=no;; esac; /bin/bash > ../test-driver --test-name "$f" \ > --log-file $b.log --trs-file $b.trs \ > --color-tests "$am__color_tests" $am__collect_skipped_logs > --enable-hard-errors "$am__enable_hard_errors" --expect-failure > "$am__expect_failure" -- \ > "$tst" > PASS: check_interval_tree > Makefile:1233: update target 'check_isize_trim.log' due to: target does not > exist > p='check_isize_trim'; \ > b='check_isize_trim'; \ > case $- in *e*) set +e;; esac; srcdirstrip=`echo "." | sed 's|.|.|g'`; case > $p in ./*) f=`echo "$p" | sed "s|^$srcdirstrip/||"`;; *) f=$p;; esac; { mgn= > red= grn= lgn= blu= brg= std=; am__color_tests=no; if test "X" = Xno; then > am__color_tests=no; elif test "X" = Xalways; then am__color_tests=yes; elif > test "X$TERM" != Xdumb && { test -t 1; } 2>/dev/null; then > am__color_tests=yes; fi; if test $am__color_tests = yes; then red='[0;31m'; > grn='[0;32m'; lgn='[1;32m'; blu='[1;34m'; mgn='[0;35m'; brg='[1m'; > std='[m'; fi; }; srcdir=.; export srcdir; case "check_isize_trim.log" in > */*) am__odir=`echo "./check_isize_trim.log" | sed 's|/[^/]*$||'`;; *) > am__odir=.;; esac; test "x$am__odir" = x"." || test -d "$am__odir" || > /usr/bin/mkdir -p "$am__odir" || exit $?; if test -f "./$f"; then dir=./; > elif test -f "$f"; then dir=; else dir="./"; fi; tst=$dir$f; > log='check_isize_trim.log'; if test -n ''; then > am__collect_skipped_logs='--collect-skipped-logs no'; else > am__collect_skipped_logs=''; fi; if test -n ''; then > am__enable_hard_errors=no; else am__enable_hard_errors=yes; fi; case " " in > *[\ \ ]$f[\ \ ]* | *[\ \ ]$dir$f[\ \ ]*) > am__expect_failure=yes;; *) am__expect_failure=no;; esac; /bin/bash > ../test-driver --test-name "$f" \ > --log-file $b.log --trs-file $b.trs \ > --color-tests "$am__color_tests" $am__collect_skipped_logs > --enable-hard-errors "$am__enable_hard_errors" --expect-failure > "$am__expect_failure" -- \ > "$tst" > PASS: check_isize_trim > Makefile:1226: update target 'check_primer_trim_edge_cases.log' due to: > target does not exist > p='check_primer_trim_edge_cases'; \ > b='check_primer_trim_edge_cases'; \ > case $- in *e*) set +e;; esac; srcdirstrip=`echo "." | sed 's|.|.|g'`; case > $p in ./*) f=`echo "$p" | sed "s|^$srcdirstrip/||"`;; *) f=$p;; esac; { mgn= > red= grn= lgn= blu= brg= std=; am__color_tests=no; if test "X" = Xno; then > am__color_tests=no; elif test "X" = Xalways; then am__color_tests=yes; elif > test "X$TERM" != Xdumb && { test -t 1; } 2>/dev/null; then > am__color_tests=yes; fi; if test $am__color_tests = yes; then red='[0;31m'; > grn='[0;32m'; lgn='[1;32m'; blu='[1;34m'; mgn='[0;35m'; brg='[1m'; > std='[m'; fi; }; srcdir=.; export srcdir; case > "check_primer_trim_edge_cases.log" in */*) am__odir=`echo > "./check_primer_trim_edge_cases.log" | sed 's|/[^/]*$||'`;; *) am__odir=.;; > esac; test "x$am__odir" = x"." || test -d "$am__odir" || /usr/bin/mkdir -p > "$am__odir" || exit $?; if test -f "./$f"; then dir=./; elif test -f "$f"; > then dir=; else dir="./"; fi; tst=$dir$f; > log='check_primer_trim_edge_cases.log'; if test -n ''; then > am__collect_skipped_logs='--collect-skipped-logs no'; else > am__collect_skipped_logs=''; fi; if test -n ''; then > am__enable_hard_errors=no; else am__enable_hard_errors=yes; fi; case " " in > *[\ \ ]$f[\ \ ]* | *[\ \ ]$dir$f[\ \ ]*) am__expect_failure=yes;; > *) am__expect_failure=no;; esac; /bin/bash ../test-driver --test-name "$f" \ > --log-file $b.log --trs-file $b.trs \ > --color-tests "$am__color_tests" $am__collect_skipped_logs > --enable-hard-errors "$am__enable_hard_errors" --expect-failure > "$am__expect_failure" -- \ > "$tst" > PASS: check_primer_trim_edge_cases > Makefile:1219: update target 'check_unpaired_trim.log' due to: target does > not exist > p='check_unpaired_trim'; \ > b='check_unpaired_trim'; \ > case $- in *e*) set +e;; esac; srcdirstrip=`echo "." | sed 's|.|.|g'`; case > $p in ./*) f=`echo "$p" | sed "s|^$srcdirstrip/||"`;; *) f=$p;; esac; { mgn= > red= grn= lgn= blu= brg= std=; am__color_tests=no; if test "X" = Xno; then > am__color_tests=no; elif test "X" = Xalways; then am__color_tests=yes; elif > test "X$TERM" != Xdumb && { test -t 1; } 2>/dev/null; then > am__color_tests=yes; fi; if test $am__color_tests = yes; then red='[0;31m'; > grn='[0;32m'; lgn='[1;32m'; blu='[1;34m'; mgn='[0;35m'; brg='[1m'; > std='[m'; fi; }; srcdir=.; export srcdir; case "check_unpaired_trim.log" in > */*) am__odir=`echo "./check_unpaired_trim.log" | sed 's|/[^/]*$||'`;; *) > am__odir=.;; esac; test "x$am__odir" = x"." || test -d "$am__odir" || > /usr/bin/mkdir -p "$am__odir" || exit $?; if test -f "./$f"; then dir=./; > elif test -f "$f"; then dir=; else dir="./"; fi; tst=$dir$f; > log='check_unpaired_trim.log'; if test -n ''; then > am__collect_skipped_logs='--collect-skipped-logs no'; else > am__collect_skipped_logs=''; fi; if test -n ''; then > am__enable_hard_errors=no; else am__enable_hard_errors=yes; fi; case " " in > *[\ \ ]$f[\ \ ]* | *[\ \ ]$dir$f[\ \ ]*) > am__expect_failure=yes;; *) am__expect_failure=no;; esac; /bin/bash > ../test-driver --test-name "$f" \ > --log-file $b.log --trs-file $b.trs \ > --color-tests "$am__color_tests" $am__collect_skipped_logs > --enable-hard-errors "$am__enable_hard_errors" --expect-failure > "$am__expect_failure" -- \ > "$tst" > PASS: check_unpaired_trim > Makefile:1212: update target 'check_common_variants.log' due to: target does > not exist > p='check_common_variants'; \ > b='check_common_variants'; \ > case $- in *e*) set +e;; esac; srcdirstrip=`echo "." | sed 's|.|.|g'`; case > $p in ./*) f=`echo "$p" | sed "s|^$srcdirstrip/||"`;; *) f=$p;; esac; { mgn= > red= grn= lgn= blu= brg= std=; am__color_tests=no; if test "X" = Xno; then > am__color_tests=no; elif test "X" = Xalways; then am__color_tests=yes; elif > test "X$TERM" != Xdumb && { test -t 1; } 2>/dev/null; then > am__color_tests=yes; fi; if test $am__color_tests = yes; then red='[0;31m'; > grn='[0;32m'; lgn='[1;32m'; blu='[1;34m'; mgn='[0;35m'; brg='[1m'; > std='[m'; fi; }; srcdir=.; export srcdir; case "check_common_variants.log" > in */*) am__odir=`echo "./check_common_variants.log" | sed 's|/[^/]*$||'`;; > *) am__odir=.;; esac; test "x$am__odir" = x"." || test -d "$am__odir" || > /usr/bin/mkdir -p "$am__odir" || exit $?; if test -f "./$f"; then dir=./; > elif test -f "$f"; then dir=; else dir="./"; fi; tst=$dir$f; > log='check_common_variants.log'; if test -n ''; then > am__collect_skipped_logs='--collect-skipped-logs no'; else > am__collect_skipped_logs=''; fi; if test -n ''; then > am__enable_hard_errors=no; else am__enable_hard_errors=yes; fi; case " " in > *[\ \ ]$f[\ \ ]* | *[\ \ ]$dir$f[\ \ ]*) > am__expect_failure=yes;; *) am__expect_failure=no;; esac; /bin/bash > ../test-driver --test-name "$f" \ > --log-file $b.log --trs-file $b.trs \ > --color-tests "$am__color_tests" $am__collect_skipped_logs > --enable-hard-errors "$am__enable_hard_errors" --expect-failure > "$am__expect_failure" -- \ > "$tst" > PASS: check_common_variants > Makefile:1205: update target 'check_variants.log' due to: target does not > exist > p='check_variants'; \ > b='check_variants'; \ > case $- in *e*) set +e;; esac; srcdirstrip=`echo "." | sed 's|.|.|g'`; case > $p in ./*) f=`echo "$p" | sed "s|^$srcdirstrip/||"`;; *) f=$p;; esac; { mgn= > red= grn= lgn= blu= brg= std=; am__color_tests=no; if test "X" = Xno; then > am__color_tests=no; elif test "X" = Xalways; then am__color_tests=yes; elif > test "X$TERM" != Xdumb && { test -t 1; } 2>/dev/null; then > am__color_tests=yes; fi; if test $am__color_tests = yes; then red='[0;31m'; > grn='[0;32m'; lgn='[1;32m'; blu='[1;34m'; mgn='[0;35m'; brg='[1m'; > std='[m'; fi; }; srcdir=.; export srcdir; case "check_variants.log" in */*) > am__odir=`echo "./check_variants.log" | sed 's|/[^/]*$||'`;; *) am__odir=.;; > esac; test "x$am__odir" = x"." || test -d "$am__odir" || /usr/bin/mkdir -p > "$am__odir" || exit $?; if test -f "./$f"; then dir=./; elif test -f "$f"; > then dir=; else dir="./"; fi; tst=$dir$f; log='check_variants.log'; if test > -n ''; then am__collect_skipped_logs='--collect-skipped-logs no'; else > am__collect_skipped_logs=''; fi; if test -n ''; then > am__enable_hard_errors=no; else am__enable_hard_errors=yes; fi; case " " in > *[\ \ ]$f[\ \ ]* | *[\ \ ]$dir$f[\ \ ]*) am__expect_failure=yes;; > *) am__expect_failure=no;; esac; /bin/bash ../test-driver --test-name "$f" \ > --log-file $b.log --trs-file $b.trs \ > --color-tests "$am__color_tests" $am__collect_skipped_logs > --enable-hard-errors "$am__enable_hard_errors" --expect-failure > "$am__expect_failure" -- \ > "$tst" > PASS: check_variants > Makefile:1198: update target 'check_removereads.log' due to: target does not > exist > p='check_removereads'; \ > b='check_removereads'; \ > case $- in *e*) set +e;; esac; srcdirstrip=`echo "." | sed 's|.|.|g'`; case > $p in ./*) f=`echo "$p" | sed "s|^$srcdirstrip/||"`;; *) f=$p;; esac; { mgn= > red= grn= lgn= blu= brg= std=; am__color_tests=no; if test "X" = Xno; then > am__color_tests=no; elif test "X" = Xalways; then am__color_tests=yes; elif > test "X$TERM" != Xdumb && { test -t 1; } 2>/dev/null; then > am__color_tests=yes; fi; if test $am__color_tests = yes; then red='[0;31m'; > grn='[0;32m'; lgn='[1;32m'; blu='[1;34m'; mgn='[0;35m'; brg='[1m'; > std='[m'; fi; }; srcdir=.; export srcdir; case "check_removereads.log" in > */*) am__odir=`echo "./check_removereads.log" | sed 's|/[^/]*$||'`;; *) > am__odir=.;; esac; test "x$am__odir" = x"." || test -d "$am__odir" || > /usr/bin/mkdir -p "$am__odir" || exit $?; if test -f "./$f"; then dir=./; > elif test -f "$f"; then dir=; else dir="./"; fi; tst=$dir$f; > log='check_removereads.log'; if test -n ''; then > am__collect_skipped_logs='--collect-skipped-logs no'; else > am__collect_skipped_logs=''; fi; if test -n ''; then > am__enable_hard_errors=no; else am__enable_hard_errors=yes; fi; case " " in > *[\ \ ]$f[\ \ ]* | *[\ \ ]$dir$f[\ \ ]*) am__expect_failure=yes;; > *) am__expect_failure=no;; esac; /bin/bash ../test-driver --test-name "$f" \ > --log-file $b.log --trs-file $b.trs \ > --color-tests "$am__color_tests" $am__collect_skipped_logs > --enable-hard-errors "$am__enable_hard_errors" --expect-failure > "$am__expect_failure" -- \ > "$tst" > FAIL: check_removereads > Makefile:1191: update target 'check_getmasked.log' due to: target does not > exist > p='check_getmasked'; \ > b='check_getmasked'; \ > case $- in *e*) set +e;; esac; srcdirstrip=`echo "." | sed 's|.|.|g'`; case > $p in ./*) f=`echo "$p" | sed "s|^$srcdirstrip/||"`;; *) f=$p;; esac; { mgn= > red= grn= lgn= blu= brg= std=; am__color_tests=no; if test "X" = Xno; then > am__color_tests=no; elif test "X" = Xalways; then am__color_tests=yes; elif > test "X$TERM" != Xdumb && { test -t 1; } 2>/dev/null; then > am__color_tests=yes; fi; if test $am__color_tests = yes; then red='[0;31m'; > grn='[0;32m'; lgn='[1;32m'; blu='[1;34m'; mgn='[0;35m'; brg='[1m'; > std='[m'; fi; }; srcdir=.; export srcdir; case "check_getmasked.log" in */*) > am__odir=`echo "./check_getmasked.log" | sed 's|/[^/]*$||'`;; *) am__odir=.;; > esac; test "x$am__odir" = x"." || test -d "$am__odir" || /usr/bin/mkdir -p > "$am__odir" || exit $?; if test -f "./$f"; then dir=./; elif test -f "$f"; > then dir=; else dir="./"; fi; tst=$dir$f; log='check_getmasked.log'; if test > -n ''; then am__collect_skipped_logs='--collect-skipped-logs no'; else > am__collect_skipped_logs=''; fi; if test -n ''; then > am__enable_hard_errors=no; else am__enable_hard_errors=yes; fi; case " " in > *[\ \ ]$f[\ \ ]* | *[\ \ ]$dir$f[\ \ ]*) am__expect_failure=yes;; *) > am__expect_failure=no;; esac; /bin/bash ../test-driver --test-name "$f" \ > --log-file $b.log --trs-file $b.trs \ > --color-tests "$am__color_tests" $am__collect_skipped_logs > --enable-hard-errors "$am__enable_hard_errors" --expect-failure > "$am__expect_failure" -- \ > "$tst" > PASS: check_getmasked > Makefile:1184: update target 'check_primer_bed.log' due to: target does not > exist > p='check_primer_bed'; \ > b='check_primer_bed'; \ > case $- in *e*) set +e;; esac; srcdirstrip=`echo "." | sed 's|.|.|g'`; case > $p in ./*) f=`echo "$p" | sed "s|^$srcdirstrip/||"`;; *) f=$p;; esac; { mgn= > red= grn= lgn= blu= brg= std=; am__color_tests=no; if test "X" = Xno; then > am__color_tests=no; elif test "X" = Xalways; then am__color_tests=yes; elif > test "X$TERM" != Xdumb && { test -t 1; } 2>/dev/null; then > am__color_tests=yes; fi; if test $am__color_tests = yes; then red='[0;31m'; > grn='[0;32m'; lgn='[1;32m'; blu='[1;34m'; mgn='[0;35m'; brg='[1m'; > std='[m'; fi; }; srcdir=.; export srcdir; case "check_primer_bed.log" in > */*) am__odir=`echo "./check_primer_bed.log" | sed 's|/[^/]*$||'`;; *) > am__odir=.;; esac; test "x$am__odir" = x"." || test -d "$am__odir" || > /usr/bin/mkdir -p "$am__odir" || exit $?; if test -f "./$f"; then dir=./; > elif test -f "$f"; then dir=; else dir="./"; fi; tst=$dir$f; > log='check_primer_bed.log'; if test -n ''; then > am__collect_skipped_logs='--collect-skipped-logs no'; else > am__collect_skipped_logs=''; fi; if test -n ''; then > am__enable_hard_errors=no; else am__enable_hard_errors=yes; fi; case " " in > *[\ \ ]$f[\ \ ]* | *[\ \ ]$dir$f[\ \ ]*) > am__expect_failure=yes;; *) am__expect_failure=no;; esac; /bin/bash > ../test-driver --test-name "$f" \ > --log-file $b.log --trs-file $b.trs \ > --color-tests "$am__color_tests" $am__collect_skipped_logs > --enable-hard-errors "$am__enable_hard_errors" --expect-failure > "$am__expect_failure" -- \ > "$tst" > PASS: check_primer_bed > Makefile:1177: update target 'check_consensus_seq_id.log' due to: target does > not exist > p='check_consensus_seq_id'; \ > b='check_consensus_seq_id'; \ > case $- in *e*) set +e;; esac; srcdirstrip=`echo "." | sed 's|.|.|g'`; case > $p in ./*) f=`echo "$p" | sed "s|^$srcdirstrip/||"`;; *) f=$p;; esac; { mgn= > red= grn= lgn= blu= brg= std=; am__color_tests=no; if test "X" = Xno; then > am__color_tests=no; elif test "X" = Xalways; then am__color_tests=yes; elif > test "X$TERM" != Xdumb && { test -t 1; } 2>/dev/null; then > am__color_tests=yes; fi; if test $am__color_tests = yes; then red='[0;31m'; > grn='[0;32m'; lgn='[1;32m'; blu='[1;34m'; mgn='[0;35m'; brg='[1m'; > std='[m'; fi; }; srcdir=.; export srcdir; case "check_consensus_seq_id.log" > in */*) am__odir=`echo "./check_consensus_seq_id.log" | sed 's|/[^/]*$||'`;; > *) am__odir=.;; esac; test "x$am__odir" = x"." || test -d "$am__odir" || > /usr/bin/mkdir -p "$am__odir" || exit $?; if test -f "./$f"; then dir=./; > elif test -f "$f"; then dir=; else dir="./"; fi; tst=$dir$f; > log='check_consensus_seq_id.log'; if test -n ''; then > am__collect_skipped_logs='--collect-skipped-logs no'; else > am__collect_skipped_logs=''; fi; if test -n ''; then > am__enable_hard_errors=no; else am__enable_hard_errors=yes; fi; case " " in > *[\ \ ]$f[\ \ ]* | *[\ \ ]$dir$f[\ \ ]*) am__expect_failure=yes;; > *) am__expect_failure=no;; esac; /bin/bash ../test-driver --test-name "$f" \ > --log-file $b.log --trs-file $b.trs \ > --color-tests "$am__color_tests" $am__collect_skipped_logs > --enable-hard-errors "$am__enable_hard_errors" --expect-failure > "$am__expect_failure" -- \ > "$tst" > PASS: check_consensus_seq_id > Makefile:1170: update target 'check_consensus_min_depth.log' due to: target > does not exist > p='check_consensus_min_depth'; \ > b='check_consensus_min_depth'; \ > case $- in *e*) set +e;; esac; srcdirstrip=`echo "." | sed 's|.|.|g'`; case > $p in ./*) f=`echo "$p" | sed "s|^$srcdirstrip/||"`;; *) f=$p;; esac; { mgn= > red= grn= lgn= blu= brg= std=; am__color_tests=no; if test "X" = Xno; then > am__color_tests=no; elif test "X" = Xalways; then am__color_tests=yes; elif > test "X$TERM" != Xdumb && { test -t 1; } 2>/dev/null; then > am__color_tests=yes; fi; if test $am__color_tests = yes; then red='[0;31m'; > grn='[0;32m'; lgn='[1;32m'; blu='[1;34m'; mgn='[0;35m'; brg='[1m'; > std='[m'; fi; }; srcdir=.; export srcdir; case > "check_consensus_min_depth.log" in */*) am__odir=`echo > "./check_consensus_min_depth.log" | sed 's|/[^/]*$||'`;; *) am__odir=.;; > esac; test "x$am__odir" = x"." || test -d "$am__odir" || /usr/bin/mkdir -p > "$am__odir" || exit $?; if test -f "./$f"; then dir=./; elif test -f "$f"; > then dir=; else dir="./"; fi; tst=$dir$f; > log='check_consensus_min_depth.log'; if test -n ''; then > am__collect_skipped_logs='--collect-skipped-logs no'; else > am__collect_skipped_logs=''; fi; if test -n ''; then > am__enable_hard_errors=no; else am__enable_hard_errors=yes; fi; case " " in > *[\ \ ]$f[\ \ ]* | *[\ \ ]$dir$f[\ \ ]*) am__expect_failure=yes;; > *) am__expect_failure=no;; esac; /bin/bash ../test-driver --test-name "$f" \ > --log-file $b.log --trs-file $b.trs \ > --color-tests "$am__color_tests" $am__collect_skipped_logs > --enable-hard-errors "$am__enable_hard_errors" --expect-failure > "$am__expect_failure" -- \ > "$tst" > PASS: check_consensus_min_depth > Makefile:1163: update target 'check_consensus_threshold.log' due to: target > does not exist > p='check_consensus_threshold'; \ > b='check_consensus_threshold'; \ > case $- in *e*) set +e;; esac; srcdirstrip=`echo "." | sed 's|.|.|g'`; case > $p in ./*) f=`echo "$p" | sed "s|^$srcdirstrip/||"`;; *) f=$p;; esac; { mgn= > red= grn= lgn= blu= brg= std=; am__color_tests=no; if test "X" = Xno; then > am__color_tests=no; elif test "X" = Xalways; then am__color_tests=yes; elif > test "X$TERM" != Xdumb && { test -t 1; } 2>/dev/null; then > am__color_tests=yes; fi; if test $am__color_tests = yes; then red='[0;31m'; > grn='[0;32m'; lgn='[1;32m'; blu='[1;34m'; mgn='[0;35m'; brg='[1m'; > std='[m'; fi; }; srcdir=.; export srcdir; case > "check_consensus_threshold.log" in */*) am__odir=`echo > "./check_consensus_threshold.log" | sed 's|/[^/]*$||'`;; *) am__odir=.;; > esac; test "x$am__odir" = x"." || test -d "$am__odir" || /usr/bin/mkdir -p > "$am__odir" || exit $?; if test -f "./$f"; then dir=./; elif test -f "$f"; > then dir=; else dir="./"; fi; tst=$dir$f; > log='check_consensus_threshold.log'; if test -n ''; then > am__collect_skipped_logs='--collect-skipped-logs no'; else > am__collect_skipped_logs=''; fi; if test -n ''; then > am__enable_hard_errors=no; else am__enable_hard_errors=yes; fi; case " " in > *[\ \ ]$f[\ \ ]* | *[\ \ ]$dir$f[\ \ ]*) am__expect_failure=yes;; > *) am__expect_failure=no;; esac; /bin/bash ../test-driver --test-name "$f" \ > --log-file $b.log --trs-file $b.trs \ > --color-tests "$am__color_tests" $am__collect_skipped_logs > --enable-hard-errors "$am__enable_hard_errors" --expect-failure > "$am__expect_failure" -- \ > "$tst" > PASS: check_consensus_threshold > Makefile:1156: update target 'check_allele_depth.log' due to: target does not > exist > p='check_allele_depth'; \ > b='check_allele_depth'; \ > case $- in *e*) set +e;; esac; srcdirstrip=`echo "." | sed 's|.|.|g'`; case > $p in ./*) f=`echo "$p" | sed "s|^$srcdirstrip/||"`;; *) f=$p;; esac; { mgn= > red= grn= lgn= blu= brg= std=; am__color_tests=no; if test "X" = Xno; then > am__color_tests=no; elif test "X" = Xalways; then am__color_tests=yes; elif > test "X$TERM" != Xdumb && { test -t 1; } 2>/dev/null; then > am__color_tests=yes; fi; if test $am__color_tests = yes; then red='[0;31m'; > grn='[0;32m'; lgn='[1;32m'; blu='[1;34m'; mgn='[0;35m'; brg='[1m'; > std='[m'; fi; }; srcdir=.; export srcdir; case "check_allele_depth.log" in > */*) am__odir=`echo "./check_allele_depth.log" | sed 's|/[^/]*$||'`;; *) > am__odir=.;; esac; test "x$am__odir" = x"." || test -d "$am__odir" || > /usr/bin/mkdir -p "$am__odir" || exit $?; if test -f "./$f"; then dir=./; > elif test -f "$f"; then dir=; else dir="./"; fi; tst=$dir$f; > log='check_allele_depth.log'; if test -n ''; then > am__collect_skipped_logs='--collect-skipped-logs no'; else > am__collect_skipped_logs=''; fi; if test -n ''; then > am__enable_hard_errors=no; else am__enable_hard_errors=yes; fi; case " " in > *[\ \ ]$f[\ \ ]* | *[\ \ ]$dir$f[\ \ ]*) > am__expect_failure=yes;; *) am__expect_failure=no;; esac; /bin/bash > ../test-driver --test-name "$f" \ > --log-file $b.log --trs-file $b.trs \ > --color-tests "$am__color_tests" $am__collect_skipped_logs > --enable-hard-errors "$am__enable_hard_errors" --expect-failure > "$am__expect_failure" -- \ > "$tst" > PASS: check_allele_depth > Makefile:1149: update target 'check_consensus.log' due to: target does not > exist > p='check_consensus'; \ > b='check_consensus'; \ > case $- in *e*) set +e;; esac; srcdirstrip=`echo "." | sed 's|.|.|g'`; case > $p in ./*) f=`echo "$p" | sed "s|^$srcdirstrip/||"`;; *) f=$p;; esac; { mgn= > red= grn= lgn= blu= brg= std=; am__color_tests=no; if test "X" = Xno; then > am__color_tests=no; elif test "X" = Xalways; then am__color_tests=yes; elif > test "X$TERM" != Xdumb && { test -t 1; } 2>/dev/null; then > am__color_tests=yes; fi; if test $am__color_tests = yes; then red='[0;31m'; > grn='[0;32m'; lgn='[1;32m'; blu='[1;34m'; mgn='[0;35m'; brg='[1m'; > std='[m'; fi; }; srcdir=.; export srcdir; case "check_consensus.log" in */*) > am__odir=`echo "./check_consensus.log" | sed 's|/[^/]*$||'`;; *) am__odir=.;; > esac; test "x$am__odir" = x"." || test -d "$am__odir" || /usr/bin/mkdir -p > "$am__odir" || exit $?; if test -f "./$f"; then dir=./; elif test -f "$f"; > then dir=; else dir="./"; fi; tst=$dir$f; log='check_consensus.log'; if test > -n ''; then am__collect_skipped_logs='--collect-skipped-logs no'; else > am__collect_skipped_logs=''; fi; if test -n ''; then > am__enable_hard_errors=no; else am__enable_hard_errors=yes; fi; case " " in > *[\ \ ]$f[\ \ ]* | *[\ \ ]$dir$f[\ \ ]*) am__expect_failure=yes;; *) > am__expect_failure=no;; esac; /bin/bash ../test-driver --test-name "$f" \ > --log-file $b.log --trs-file $b.trs \ > --color-tests "$am__color_tests" $am__collect_skipped_logs > --enable-hard-errors "$am__enable_hard_errors" --expect-failure > "$am__expect_failure" -- \ > "$tst" > PASS: check_consensus > Makefile:1142: update target 'check_quality_trim.log' due to: target does not > exist > p='check_quality_trim'; \ > b='check_quality_trim'; \ > case $- in *e*) set +e;; esac; srcdirstrip=`echo "." | sed 's|.|.|g'`; case > $p in ./*) f=`echo "$p" | sed "s|^$srcdirstrip/||"`;; *) f=$p;; esac; { mgn= > red= grn= lgn= blu= brg= std=; am__color_tests=no; if test "X" = Xno; then > am__color_tests=no; elif test "X" = Xalways; then am__color_tests=yes; elif > test "X$TERM" != Xdumb && { test -t 1; } 2>/dev/null; then > am__color_tests=yes; fi; if test $am__color_tests = yes; then red='[0;31m'; > grn='[0;32m'; lgn='[1;32m'; blu='[1;34m'; mgn='[0;35m'; brg='[1m'; > std='[m'; fi; }; srcdir=.; export srcdir; case "check_quality_trim.log" in > */*) am__odir=`echo "./check_quality_trim.log" | sed 's|/[^/]*$||'`;; *) > am__odir=.;; esac; test "x$am__odir" = x"." || test -d "$am__odir" || > /usr/bin/mkdir -p "$am__odir" || exit $?; if test -f "./$f"; then dir=./; > elif test -f "$f"; then dir=; else dir="./"; fi; tst=$dir$f; > log='check_quality_trim.log'; if test -n ''; then > am__collect_skipped_logs='--collect-skipped-logs no'; else > am__collect_skipped_logs=''; fi; if test -n ''; then > am__enable_hard_errors=no; else am__enable_hard_errors=yes; fi; case " " in > *[\ \ ]$f[\ \ ]* | *[\ \ ]$dir$f[\ \ ]*) > am__expect_failure=yes;; *) am__expect_failure=no;; esac; /bin/bash > ../test-driver --test-name "$f" \ > --log-file $b.log --trs-file $b.trs \ > --color-tests "$am__color_tests" $am__collect_skipped_logs > --enable-hard-errors "$am__enable_hard_errors" --expect-failure > "$am__expect_failure" -- \ > "$tst" > PASS: check_quality_trim > Makefile:1135: update target 'check_trim.log' due to: target does not exist > p='check_trim'; \ > b='check_trim'; \ > case $- in *e*) set +e;; esac; srcdirstrip=`echo "." | sed 's|.|.|g'`; case > $p in ./*) f=`echo "$p" | sed "s|^$srcdirstrip/||"`;; *) f=$p;; esac; { mgn= > red= grn= lgn= blu= brg= std=; am__color_tests=no; if test "X" = Xno; then > am__color_tests=no; elif test "X" = Xalways; then am__color_tests=yes; elif > test "X$TERM" != Xdumb && { test -t 1; } 2>/dev/null; then > am__color_tests=yes; fi; if test $am__color_tests = yes; then red='[0;31m'; > grn='[0;32m'; lgn='[1;32m'; blu='[1;34m'; mgn='[0;35m'; brg='[1m'; > std='[m'; fi; }; srcdir=.; export srcdir; case "check_trim.log" in */*) > am__odir=`echo "./check_trim.log" | sed 's|/[^/]*$||'`;; *) am__odir=.;; > esac; test "x$am__odir" = x"." || test -d "$am__odir" || /usr/bin/mkdir -p > "$am__odir" || exit $?; if test -f "./$f"; then dir=./; elif test -f "$f"; > then dir=; else dir="./"; fi; tst=$dir$f; log='check_trim.log'; if test -n > ''; then am__collect_skipped_logs='--collect-skipped-logs no'; else > am__collect_skipped_logs=''; fi; if test -n ''; then > am__enable_hard_errors=no; else am__enable_hard_errors=yes; fi; case " " in > *[\ \ ]$f[\ \ ]* | *[\ \ ]$dir$f[\ \ ]*) > am__expect_failure=yes;; *) am__expect_failure=no;; esac; /bin/bash > ../test-driver --test-name "$f" \ > --log-file $b.log --trs-file $b.trs \ > --color-tests "$am__color_tests" $am__collect_skipped_logs > --enable-hard-errors "$am__enable_hard_errors" --expect-failure > "$am__expect_failure" -- \ > "$tst" > PASS: check_trim > Makefile:1128: update target 'check_primer_trim.log' due to: target does not > exist > p='check_primer_trim'; \ > b='check_primer_trim'; \ > case $- in *e*) set +e;; esac; srcdirstrip=`echo "." | sed 's|.|.|g'`; case > $p in ./*) f=`echo "$p" | sed "s|^$srcdirstrip/||"`;; *) f=$p;; esac; { mgn= > red= grn= lgn= blu= brg= std=; am__color_tests=no; if test "X" = Xno; then > am__color_tests=no; elif test "X" = Xalways; then am__color_tests=yes; elif > test "X$TERM" != Xdumb && { test -t 1; } 2>/dev/null; then > am__color_tests=yes; fi; if test $am__color_tests = yes; then red='[0;31m'; > grn='[0;32m'; lgn='[1;32m'; blu='[1;34m'; mgn='[0;35m'; brg='[1m'; > std='[m'; fi; }; srcdir=.; export srcdir; case "check_primer_trim.log" in > */*) am__odir=`echo "./check_primer_trim.log" | sed 's|/[^/]*$||'`;; *) > am__odir=.;; esac; test "x$am__odir" = x"." || test -d "$am__odir" || > /usr/bin/mkdir -p "$am__odir" || exit $?; if test -f "./$f"; then dir=./; > elif test -f "$f"; then dir=; else dir="./"; fi; tst=$dir$f; > log='check_primer_trim.log'; if test -n ''; then > am__collect_skipped_logs='--collect-skipped-logs no'; else > am__collect_skipped_logs=''; fi; if test -n ''; then > am__enable_hard_errors=no; else am__enable_hard_errors=yes; fi; case " " in > *[\ \ ]$f[\ \ ]* | *[\ \ ]$dir$f[\ \ ]*) am__expect_failure=yes;; > *) am__expect_failure=no;; esac; /bin/bash ../test-driver --test-name "$f" \ > --log-file $b.log --trs-file $b.trs \ > --color-tests "$am__color_tests" $am__collect_skipped_logs > --enable-hard-errors "$am__enable_hard_errors" --expect-failure > "$am__expect_failure" -- \ > "$tst" > PASS: check_primer_trim > Makefile:975: update target 'test-suite.log' due to: target does not exist > bases='check_primer_trim.log check_trim.log check_quality_trim.log > check_consensus.log check_allele_depth.log check_consensus_threshold.log > check_consensus_min_depth.log check_consensus_seq_id.log check_primer_bed.log > check_getmasked.log check_removereads.log check_variants.log > check_common_variants.log check_unpaired_trim.log > check_primer_trim_edge_cases.log check_isize_trim.log check_interval_tree.log > check_amplicon_search.log check_consensus_min_insert_threshold.log > check_quality_trim_unpaired.log check_strand_variants.log'; bases=`for i in > $bases; do echo $i; done | sed 's/\.log$//'`; bases=`echo $bases`; \ > am__f_ok () { test -f "$1" && test -r "$1"; }; \ > redo_bases=`for i in $bases; do \ > am__f_ok $i.trs && am__f_ok $i.log || echo $i; \ > done`; \ > if test -n "$redo_bases"; then \ > redo_logs=`for i in $redo_bases; do echo $i.log; done`; \ > redo_results=`for i in $redo_bases; do echo $i.trs; done`; \ > if (target_option=n; case ${target_option-} in ?) ;; *) echo > "am__make_running_with_option: internal error: invalid" "target option > '${target_option-}' specified" >&2; exit 1;; esac; has_opt=no; > sane_makeflags=$MAKEFLAGS; if { if test -z '5'; then false; elif test -n > 'x86_64-pc-linux-gnu'; then true; elif test -n '4.4.1' && test -n > '/build/reproducible-path/ivar-1.4.4+dfsg/tests'; then true; else false; fi; > }; then sane_makeflags=$MFLAGS; else case $MAKEFLAGS in *\\[\ \ ]*) bs=\\; > sane_makeflags=`printf '%s\n' "$MAKEFLAGS" | sed "s/$bs$bs[$bs $bs > ]*//g"`;; esac; fi; skip_next=no; strip_trailopt () { flg=`printf '%s\n' > "$flg" | sed "s/$1.*$//"`; }; for flg in $sane_makeflags; do test $skip_next > = yes && { skip_next=no; continue; }; case $flg in *=*|--*) continue;; -*I) > strip_trailopt 'I'; skip_next=yes;; -*I?*) strip_trailopt 'I';; -*O) > strip_trailopt 'O'; skip_next=yes;; -*O?*) strip_trailopt 'O';; -*l) > strip_trailopt 'l'; skip_next=yes;; -*l?*) strip_trailopt 'l';; -[dEDm]) > skip_next=yes;; -[JT]) skip_next=yes;; esac; case $flg in *$target_option*) > has_opt=yes; break;; esac; done; test $has_opt = yes); then :; else \ > rm -f $redo_logs && rm -f $redo_results || exit 1; \ > fi; \ > fi; \ > if test -n "$am__remaking_logs"; then \ > echo "fatal: making test-suite.log: possible infinite" \ > "recursion detected" >&2; \ > elif test -n "$redo_logs"; then \ > am__remaking_logs=yes make $redo_logs; \ > fi; \ > if (target_option=n; case ${target_option-} in ?) ;; *) echo > "am__make_running_with_option: internal error: invalid" "target option > '${target_option-}' specified" >&2; exit 1;; esac; has_opt=no; > sane_makeflags=$MAKEFLAGS; if { if test -z '5'; then false; elif test -n > 'x86_64-pc-linux-gnu'; then true; elif test -n '4.4.1' && test -n > '/build/reproducible-path/ivar-1.4.4+dfsg/tests'; then true; else false; fi; > }; then sane_makeflags=$MFLAGS; else case $MAKEFLAGS in *\\[\ \ ]*) bs=\\; > sane_makeflags=`printf '%s\n' "$MAKEFLAGS" | sed "s/$bs$bs[$bs $bs > ]*//g"`;; esac; fi; skip_next=no; strip_trailopt () { flg=`printf '%s\n' > "$flg" | sed "s/$1.*$//"`; }; for flg in $sane_makeflags; do test $skip_next > = yes && { skip_next=no; continue; }; case $flg in *=*|--*) continue;; -*I) > strip_trailopt 'I'; skip_next=yes;; -*I?*) strip_trailopt 'I';; -*O) > strip_trailopt 'O'; skip_next=yes;; -*O?*) strip_trailopt 'O';; -*l) > strip_trailopt 'l'; skip_next=yes;; -*l?*) strip_trailopt 'l';; -[dEDm]) > skip_next=yes;; -[JT]) skip_next=yes;; esac; case $flg in *$target_option*) > has_opt=yes; break;; esac; done; test $has_opt = yes); then :; else \ > st=0; \ > errmsg="fatal: making test-suite.log: failed to create"; \ > for i in $redo_bases; do \ > test -f $i.trs && test -r $i.trs \ > || { echo "$errmsg $i.trs" >&2; st=1; }; \ > test -f $i.log && test -r $i.log \ > || { echo "$errmsg $i.log" >&2; st=1; }; \ > done; \ > test $st -eq 0 || exit 1; \ > fi > case $- in *e*) set +e;; esac; { mgn= red= grn= lgn= blu= brg= std=; > am__color_tests=no; if test "X" = Xno; then am__color_tests=no; elif test "X" > = Xalways; then am__color_tests=yes; elif test "X$TERM" != Xdumb && { test -t > 1; } 2>/dev/null; then am__color_tests=yes; fi; if test $am__color_tests = > yes; then red='[0;31m'; grn='[0;32m'; lgn='[1;32m'; blu='[1;34m'; > mgn='[0;35m'; brg='[1m'; std='[m'; fi; }; bases='check_primer_trim.log > check_trim.log check_quality_trim.log check_consensus.log > check_allele_depth.log check_consensus_threshold.log > check_consensus_min_depth.log check_consensus_seq_id.log check_primer_bed.log > check_getmasked.log check_removereads.log check_variants.log > check_common_variants.log check_unpaired_trim.log > check_primer_trim_edge_cases.log check_isize_trim.log check_interval_tree.log > check_amplicon_search.log check_consensus_min_insert_threshold.log > check_quality_trim_unpaired.log check_strand_variants.log'; bases=`for i in > $bases; do echo $i; done | sed 's/\.log$//'`; bases=`echo $bases`; \ > ws='[ ]'; \ > results=`for b in $bases; do echo $b.trs; done`; \ > test -n "$results" || results=/dev/null; \ > all=` grep "^$ws*:test-result:" $results | wc -l`; \ > pass=` grep "^$ws*:test-result:$ws*PASS" $results | wc -l`; \ > fail=` grep "^$ws*:test-result:$ws*FAIL" $results | wc -l`; \ > skip=` grep "^$ws*:test-result:$ws*SKIP" $results | wc -l`; \ > xfail=`grep "^$ws*:test-result:$ws*XFAIL" $results | wc -l`; \ > xpass=`grep "^$ws*:test-result:$ws*XPASS" $results | wc -l`; \ > error=`grep "^$ws*:test-result:$ws*ERROR" $results | wc -l`; \ > if test `expr $fail + $xpass + $error` -eq 0; then \ > success=true; \ > else \ > success=false; \ > fi; \ > br='==================='; br=$br$br$br$br; \ > result_count () \ > { \ > if test x"$1" = x"--maybe-color"; then \ > maybe_colorize=yes; \ > elif test x"$1" = x"--no-color"; then \ > maybe_colorize=no; \ > else \ > echo "test-suite.log: invalid 'result_count' usage" >&2; exit 4; \ > fi; \ > shift; \ > desc=$1 count=$2; \ > if test $maybe_colorize = yes && test $count -gt 0; then \ > color_start=$3 color_end=$std; \ > else \ > color_start= color_end=; \ > fi; \ > echo "${color_start}# $desc $count${color_end}"; \ > }; \ > create_testsuite_report () \ > { \ > result_count $1 "TOTAL:" $all "$brg"; \ > result_count $1 "PASS: " $pass "$grn"; \ > result_count $1 "SKIP: " $skip "$blu"; \ > result_count $1 "XFAIL:" $xfail "$lgn"; \ > result_count $1 "FAIL: " $fail "$red"; \ > result_count $1 "XPASS:" $xpass "$red"; \ > result_count $1 "ERROR:" $error "$mgn"; \ > }; \ > output_system_information () \ > { \ > echo; \ > { uname -a | mawk '{ \ > printf "System information (uname -a):"; \ > for (i = 1; i < NF; ++i) \ > { \ > if (i != 2) \ > printf " %s", $i; \ > } \ > printf "\n"; \ > }'; } 2>&1; \ > if test -r /etc/os-release; then \ > echo "Distribution information (/etc/os-release):"; \ > sed 8q /etc/os-release; \ > elif test -r /etc/issue; then \ > echo "Distribution information (/etc/issue):"; \ > cat /etc/issue; \ > fi; \ > }; \ > please_report () \ > { \ > echo "Some test(s) failed. Please report this to [email protected],"; \ > echo "together with the test-suite.log file (gzipped) and your system"; \ > echo "information. Thanks."; \ > }; \ > { \ > echo "ivar 1.4.4: tests/test-suite.log" | \ > { sed 's/.*/ & /;h;s/./=/g;p;x;s/ *$//;p;g' && echo; }; > \ > create_testsuite_report --no-color; \ > output_system_information; \ > echo; \ > echo ".. contents:: :depth: 2"; \ > echo; \ > for b in $bases; do echo $b; done \ > | mawk ' function fatal(msg) { print "fatal: making test-suite.log: " msg > | "cat >&2"; exit 1; } function rst_section(header) { print header; len = > length(header); for (i = 1; i <= len; i = i + 1) printf "="; printf "\n\n"; } > { copy_in_global_log = 1; global_test_result = "RUN"; while ((rc = (getline > line < ($0 ".trs"))) != 0) { if (rc < 0) fatal("failed to read from " $0 > ".trs"); if (line ~ /^[ ]*:global-test-result:[ ]*/) { sub("^[ > ]*:global-test-result:[ ]*", "", line); sub("[ ]*$", "", line); > global_test_result = line; } else if (line ~ /^[ > ]*:copy-in-global-log:[ ]*[nN][oO]/) copy_in_global_log = 0; }; if > (copy_in_global_log) { rst_section(global_test_result ": " $0); while ((rc = > (getline line < ($0 ".log"))) != 0) { if (rc < 0) fatal("failed to read from > " $0 ".log"); print line; }; printf "\n"; }; close ($0 ".trs"); close ($0 > ".log"); }'; \ > } >test-suite.log.tmp || exit 1; \ > mv test-suite.log.tmp test-suite.log; \ > if $success; then \ > col="$grn"; \ > else \ > col="$red"; \ > test x"$VERBOSE" = x || cat test-suite.log; \ > fi; \ > echo "${col}$br${std}"; \ > echo "${col}Testsuite summary"' for ivar 1.4.4'"${std}"; \ > echo "${col}$br${std}"; \ > create_testsuite_report --maybe-color; \ > echo "$col$br$std"; \ > if $success; then :; else \ > echo "${col}See tests/test-suite.log for debugging.${std}";\ > if test -n "[email protected]"; then \ > please_report | sed -e "s/^/${col}/" -e s/'$'/"${std}"/; \ > fi; \ > echo "$col$br$std"; \ > fi; \ > $success || exit 1 > ====================================== > ivar 1.4.4: tests/test-suite.log > ====================================== > > # TOTAL: 21 > # PASS: 20 > # SKIP: 0 > # XFAIL: 0 > # FAIL: 1 > # XPASS: 0 > # ERROR: 0 > > System information (uname -a): Linux 6.1.0-32-cloud-amd64 #1 SMP > PREEMPT_DYNAMIC Debian 6.1.129-1 (2025-03-06) x86_64 > Distribution information (/etc/os-release): > PRETTY_NAME="Debian GNU/Linux trixie/sid" > NAME="Debian GNU/Linux" > VERSION_CODENAME=trixie > ID=debian > HOME_URL="https://www.debian.org/"; > SUPPORT_URL="https://www.debian.org/support"; > BUG_REPORT_URL="https://bugs.debian.org/"; > > .. contents:: :depth: 2 > > FAIL: check_removereads > ======================= > > Found 8 primers in BED file > Writing to ../data/test.trimmed.masked.bam > [E::idx_find_and_load] Could not retrieve index file for > '../data/test.trimmed.sorted.bam' > Number of references: 1 > Reference Name: Consensus_ZI-27_threshold_0_quality_20 > Reference Length: 10086 > Using Region: Consensus_ZI-27_threshold_0_quality_20 > Sorted By Coordinate > Results: > 0 reads were removed. > FAIL check_removereads (exit status: 1) > > ============================================================================ > Testsuite summary for ivar 1.4.4 > ============================================================================ > # TOTAL: 21 > # PASS: 20 > # SKIP: 0 > # XFAIL: 0 > # FAIL: 1 > # XPASS: 0 > # ERROR: 0 > ============================================================================ > See tests/test-suite.log for debugging. > Some test(s) failed. Please report this to [email protected], > together with the test-suite.log file (gzipped) and your system > information. Thanks. > ============================================================================ > make[5]: *** [Makefile:976: test-suite.log] Error 1 shuffle=reverse > make[5]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg/tests' > make[4]: *** [Makefile:1111: check-TESTS] Error 2 shuffle=reverse > make[4]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg/tests' > make[3]: *** [Makefile:1323: check-am] Error 2 shuffle=reverse > make[3]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg/tests' > make[2]: *** [Makefile:377: check-recursive] Error 1 shuffle=reverse > make[2]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg' > dh_auto_test: error: make -j1 check "TESTSUITEFLAGS=-j1 --verbose" VERBOSE=1 > returned exit code 2 The full build log is available from: http://qa-logs.debian.net/2025/05/05/shuffle/reverse/ivar_1.4.4+dfsg-1_unstable_reverse.log If you reassign this bug to another package, please mark it as 'affects'-ing this package. See https://www.debian.org/Bugs/server-control#affects
