Source: python-csb Version: 1.2.5+dfsg-10 User: debian-pyt...@lists.debian.org Usertags: syntaxwarning
Hi Maintainer The SyntaxWarning below were emitted when this package was tested with pipuarts[1]. Regards Graham [1] https://piuparts.debian.org/sid/source/p/python-csb.html Setting up python3-csb (1.2.5+dfsg-10) ... /usr/lib/python3/dist-packages/csb/bio/io/hhpred.py:210: SyntaxWarning: invalid escape sequence '\d' m = re.search('(\d+)\D+(\d+)', line).groups() /usr/lib/python3/dist-packages/csb/bio/io/hhpred.py:260: SyntaxWarning: invalid escape sequence '\s' seq = re.sub('\s+', '', ''.join(lines[1:])) /usr/lib/python3/dist-packages/csb/bio/io/hhpred.py:307: SyntaxWarning: invalid escape sequence '\-' pattern = re.compile('^[A-Z\-]\s[0-9]+\s+') /usr/lib/python3/dist-packages/csb/bio/io/procheck.py:31: SyntaxWarning: invalid escape sequence '\s' input_file_name = re.compile('>>>-----.*?\n.*?\n\s*\|\s*(\S+)\s+') /usr/lib/python3/dist-packages/csb/bio/io/procheck.py:32: SyntaxWarning: invalid escape sequence '\d' residues = re.compile('(\d+)\s*residues\s\|') /usr/lib/python3/dist-packages/csb/bio/io/procheck.py:33: SyntaxWarning: invalid escape sequence '\s' ramachandran_plot = re.compile('Ramachandran\splot:\s*(\d+\.\d+)' + /usr/lib/python3/dist-packages/csb/bio/io/procheck.py:34: SyntaxWarning: invalid escape sequence '\s' '%\s*core\s*(\d+\.\d+)%\s*allow\s*(\d+\.\d+)' + /usr/lib/python3/dist-packages/csb/bio/io/procheck.py:35: SyntaxWarning: invalid escape sequence '\s' '%\s*gener\s*(\d+\.\d+)%\s*disall') /usr/lib/python3/dist-packages/csb/bio/io/procheck.py:36: SyntaxWarning: invalid escape sequence '\s' labelled_all = re.compile('Ramachandrans:\s*(\d+)\s*.*?out\sof\s*(\d+)') /usr/lib/python3/dist-packages/csb/bio/io/procheck.py:37: SyntaxWarning: invalid escape sequence '\s' labelled_chi = re.compile('Chi1-chi2\splots:\s*(\d+)\s*.*?out\sof\s*(\d+)') /usr/lib/python3/dist-packages/csb/bio/io/procheck.py:38: SyntaxWarning: invalid escape sequence '\s' bad_contacts = re.compile('Bad\scontacts:\s*(\d+)') /usr/lib/python3/dist-packages/csb/bio/io/procheck.py:39: SyntaxWarning: invalid escape sequence '\s' g_factors = re.compile('G-factors\s*Dihedrals:\s*([0-9-+.]+)' + /usr/lib/python3/dist-packages/csb/bio/io/procheck.py:40: SyntaxWarning: invalid escape sequence '\s' '\s*Covalent:\s*([0-9-+.]+)\s*Overall:\s*([0-9-+.]+)') /usr/lib/python3/dist-packages/csb/bio/io/whatif.py:32: SyntaxWarning: invalid escape sequence '\s' re_ramachandran = re.compile('Ramachandran\s*Z-score\s*:\s*([0-9.Ee-]+)') /usr/lib/python3/dist-packages/csb/bio/io/whatif.py:33: SyntaxWarning: invalid escape sequence '\s' re_1st = re.compile('1st\s*generation\s*packing\s*quality\s*:\s*([0-9.Ee-]+)') /usr/lib/python3/dist-packages/csb/bio/io/whatif.py:34: SyntaxWarning: invalid escape sequence '\s' re_2nd = re.compile('2nd\s*generation\s*packing\s*quality\s*:\s*([0-9.Ee-]+)') /usr/lib/python3/dist-packages/csb/bio/io/whatif.py:35: SyntaxWarning: invalid escape sequence '\s' re_backbone = re.compile('Backbone\s*conformation\s*Z-score\s*:\s*([0-9.Ee-]+)') /usr/lib/python3/dist-packages/csb/bio/io/whatif.py:36: SyntaxWarning: invalid escape sequence '\S' re_rotamer = re.compile('chi-1\S*chi-2\s*rotamer\s*normality\s*:\s*([0-9.Ee-]+)') /usr/lib/python3/dist-packages/csb/bio/io/wwpdb.py:1222: SyntaxWarning: invalid escape sequence '\d' res = re.search("(\d+(?:\.\d+)?)\s+ANGSTROM", line) /usr/lib/python3/dist-packages/csb/bio/sequence/__init__.py:566: SyntaxWarning: invalid escape sequence '\w' self._residues += re.sub('([^\w\-\.])+', '', string) /usr/lib/python3/dist-packages/csb/bio/structure/__init__.py:2129: SyntaxWarning: invalid escape sequence '\s' string = ''.join(re.split('\s+', string)) /usr/lib/python3/dist-packages/csb/bio/structure/__init__.py:2131: SyntaxWarning: invalid escape sequence '\s' conf_string = ''.join(re.split('\s+', conf_string)) /usr/lib/python3/dist-packages/csb/statistics/__init__.py:341: SyntaxWarning: invalid escape sequence '\s' """ /usr/lib/python3/dist-packages/csb/test/cases/io/__init__.py:482: SyntaxWarning: invalid escape sequence '\w' "([0-9a-zA-Z]([-.\w]*[0-9a-zA-Z])"]
