Hi! On Wed, Sep 25, 2024 at 04:45:41PM +0200, Michael R. Crusoe wrote: > If we are removing the "khmer" bioinformatics tool for being abandoned > upstream, then we need to finish packaging sourmash. > > Sourmash is a Python package with a rust core, and there are some rust crates > that need brand NEW Debian packages according to "cargo-debstatus": > > - az v1.2.1 > - counter v0.6.0 > - murmurhash3 v0.0.5 > - needletail v0.5.1 > - histogram v0.11.0 > - niffler v2.6.0 > - proc-macro2-diagnostics v0.10.1 > - piz v0.5.1 > - codepage-437 v0.1.0 > - rocksdb v0.21.0 > - librocksdb-sys v0.11.0+8.1.1 > - roots v0.0.8 > - vec-collections v0.4.3 > - sorted-iter v0.1.8 > > Any volunteers to crank out some new Debian packages for these rust crates? I > only have a small amount of rust for Debian experience myself.
I can help with those. I saw that you start with az, I will start for bottom. :-D > > Bonus crate that is optional: > - finch v0.6.0 > > > On 18/01/2019 16.08, Michael R. Crusoe wrote: > > Package: wnpp > > Severity: wishlist > > Owner: Debian Med team <debian-...@lists.debian.org> > > > > * Package name : sourmash > > Version : 2.0.0~a11 > > Upstream Author : C. Titus Brown <ti...@idyll.org>, Luiz C. Irber, Jr > > <sourm...@luizirber.org> > > * URL : http://sourmash.readthedocs.io/en/latest/ > > * License : BSD-3-Clause > > Programming Lang: Python, C++ > > Description : tools for comparing DNA sequences with MinHash sketches > > > > Compute MinHash signatures for nucleotide (DNA/RNA) and protein sequences. > > . > > MinHash sketches provide a lightweight way to store “signatures” of large > > DNA > > or RNA sequence collections, and then compare or search them using a > > Jaccard > > index. MinHash sketches can be used to identify samples, find similar > > samples, > > identify data sets with shared sequences, and build phylogenetic trees > > (Ondov et al. 2015). > > . > > sourmash provides a command line script, a Python library, and a CPython > > module for MinHash sketches > > > > Sourmash is team maintained by Debian-Med at > > https://salsa.debian.org/med-team/sourmash
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