Source: prime-phylo Version: 1.0.11-10 Severity: serious Justification: FTBFS Tags: trixie sid ftbfs User: [email protected] Usertags: ftbfs-20240313 ftbfs-trixie ftbfs-impfuncdef
Hi, During a rebuild of all packages in sid, your package failed to build on amd64. This is most likely caused by a change in dpkg 1.22.6, that enabled -Werror=implicit-function-declaration. For more information, see https://wiki.debian.org/qa.debian.org/FTBFS#A2024-03-13_-Werror.3Dimplicit-function-declaration Relevant part (hopefully): > cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/cxx/libraries/sfile && > /usr/bin/cc -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE > -Dprime_phylo_sfile_EXPORTS > -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/cxx/libraries/sfile > -I/<<PKGBUILDDIR>>/src/cxx/libraries/sfile > -I/usr/lib/x86_64-linux-gnu/openmpi/include > -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi > -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx > -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime > -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/cxx/libraries/prime > -I/<<PKGBUILDDIR>>/src/cxx/libraries -g -O2 > -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. > -fstack-protector-strong -fstack-clash-protection -Wformat > -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall > -fexceptions -g -fPIC -MD -MT > src/cxx/libraries/sfile/CMakeFiles/prime-phylo-sfile.dir/sfile.c.o -MF > CMakeFiles/prime-phylo-sfile.dir/sfile.c.o.d -o > CMakeFiles/prime-phylo-sfile.dir/sfile.c.o -c > /<<PKGBUILDDIR>>/src/cxx/libraries/sfile/sfile.c > /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/cxx/libraries/sfile/gb.tab.c: In > function ‘yyparse’: > /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/cxx/libraries/sfile/gb.tab.c:1096:16: > error: implicit declaration of function ‘yylex’ > [-Werror=implicit-function-declaration] > 1096 | yychar = yylex (); > | ^~~~~ > gb.y: In function ‘yyerror’: > gb.y:291:70: error: implicit declaration of function ‘linenumber’ > [-Werror=implicit-function-declaration] > gb.y: In function ‘add_to_seq’: > gb.y:402:9: warning: unused variable ‘new_buf’ [-Wunused-variable] > /<<PKGBUILDDIR>>/src/cxx/libraries/sfile/gbread.c: In function ‘main’: > /<<PKGBUILDDIR>>/src/cxx/libraries/sfile/gbread.c:17:10: error: implicit > declaration of function ‘strcmp’ [-Werror=implicit-function-declaration] > 17 | if (!strcmp(argv[opt], "-d")) { > | ^~~~~~ > /<<PKGBUILDDIR>>/src/cxx/libraries/sfile/gbread.c:8:1: note: include > ‘<string.h>’ or provide a declaration of ‘strcmp’ > 7 | #include "gb.tab.h" > +++ |+#include <string.h> > 8 | > seqreader.l: In function ‘seq_read’: > seqreader.l:270:9: warning: unused variable ‘code’ [-Wunused-variable] > /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/cxx/libraries/sfile/lexer.c: At top > level: > /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/cxx/libraries/sfile/lexer.c:1864:16: > warning: ‘input’ defined but not used [-Wunused-function] > 1864 | static int input (void) > | ^~~~~ > /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/cxx/libraries/sfile/lexer.c:1821:17: > warning: ‘yyunput’ defined but not used [-Wunused-function] > 1821 | static void yyunput (int c, char * yy_bp ) > | ^~~~~~~ > /<<PKGBUILDDIR>>/src/cxx/libraries/sfile/sfile.c: In function ‘seq_print’: > /<<PKGBUILDDIR>>/src/cxx/libraries/sfile/sfile.c:265:14: warning: format ‘%d’ > expects argument of type ‘int’, but argument 2 has type ‘long int’ [-Wformat=] > 265 | printf("%9d", char_counter + 1); > | ^~~~~ ~~~~~~~~~~~~~~~~ > | | > | long int > /<<PKGBUILDDIR>>/src/cxx/libraries/sfile/sfile.c:212:15: warning: variable > ‘date’ set but not used [-Wunused-but-set-variable] > 212 | char *top, *date; > | ^~~~ > cc1: some warnings being treated as errors > make[3]: *** > [src/cxx/libraries/sfile/CMakeFiles/prime-phylo-sfile.dir/build.make:90: > src/cxx/libraries/sfile/CMakeFiles/prime-phylo-sfile.dir/gbread.c.o] Error 1 The full build log is available from: http://qa-logs.debian.net/2024/03/13/prime-phylo_1.0.11-10_unstable.log All bugs filed during this archive rebuild are listed at: https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20240313;[email protected] or: https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20240313&[email protected]&allbugs=1&cseverity=1&ctags=1&caffected=1#results A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! If you reassign this bug to another package, please mark it as 'affects'-ing this package. See https://www.debian.org/Bugs/server-control#affects If you fail to reproduce this, please provide a build log and diff it with mine so that we can identify if something relevant changed in the meantime.
