Source: mira Version: 4.9.6-10 Severity: minor Tags: trixie sid ftbfs User: [email protected] Usertags: ftbfs-binary-20230816 ftbfs-binary-after-build User: [email protected] Usertags: qa-doublebuild
Hi, This package fails to do build a binary-only build (not source) after a successful build (dpkg-buildpackage ; dpkg-buildpackage -b). This is probably a clear violation of Debian Policy section 4.9 (clean target), but this is filed as severity:minor for now, because a discussion on debian-devel showed that we might want to revisit the requirement of a working 'clean' target. More information about this class of issues, included common problems and solutions, is available at https://wiki.debian.org/qa.debian.org/FTBFS/DoubleBuild Relevant part of the build log: > cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env > -us -uc -rfakeroot -b > --------------------------------------------------------------------------------------------------------------- > > dpkg-buildpackage: info: source package mira > dpkg-buildpackage: info: source version 4.9.6-10 > dpkg-buildpackage: info: source distribution unstable > dpkg-buildpackage: info: source changed by Nilesh Patra <[email protected]> > dpkg-source --before-build . > dpkg-buildpackage: info: host architecture amd64 > debian/rules clean > dh clean > rm -f debian/mira-assembler.debhelper.log debian/mira-doc.debhelper.log > debian/mira-rfam-12s-rrna.debhelper.log > debian/rules override_dh_auto_clean > make[1]: Entering directory '/<<PKGBUILDDIR>>' > ( cd doc ; make clean ) || true > make[2]: Entering directory '/<<PKGBUILDDIR>>/doc' > Making clean in docbook > make[3]: Entering directory '/<<PKGBUILDDIR>>/doc/docbook' > rm -rf .libs _libs > rm -rf *html *pdf versionfile > rm -f *.lo > make[3]: Leaving directory '/<<PKGBUILDDIR>>/doc/docbook' > make[3]: Entering directory '/<<PKGBUILDDIR>>/doc' > rm -rf .libs _libs > rm -f *.lo > make[3]: Leaving directory '/<<PKGBUILDDIR>>/doc' > make[2]: Leaving directory '/<<PKGBUILDDIR>>/doc' > dh_auto_clean || true > make -j8 distclean > make[2]: Entering directory '/<<PKGBUILDDIR>>' > Making distclean in man > make[3]: Entering directory '/<<PKGBUILDDIR>>/man' > rm -rf .libs _libs > rm -f *.lo > test -z "" || rm -f > test . = "." || test -z "" || rm -f > rm -f Makefile > make[3]: Leaving directory '/<<PKGBUILDDIR>>/man' > Making distclean in src > make[3]: Entering directory '/<<PKGBUILDDIR>>/src' > Making distclean in debuggersupport > make[4]: Entering directory '/<<PKGBUILDDIR>>/src/debuggersupport' > rm -rf .libs _libs > test -z "libmiradebuggersupport.a" || rm -f libmiradebuggersupport.a > rm -f *.o > rm -f *.lo > rm -f *.tab.c > test -z "" || rm -f > rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags > test . = "." || test -z "" || rm -f > rm -f ./.deps/dbgsupport.Po > rm -f Makefile > make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/debuggersupport' > Making distclean in io > make[4]: Entering directory '/<<PKGBUILDDIR>>/src/io' > rm -rf .libs _libs > rm -rf *flexer.cc *xxd.H > test -z "libmirafio.a" || rm -f libmirafio.a > rm -f *.o > rm -f *.lo > rm -f *.tab.c > test -z "" || rm -f > rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags > test . = "." || test -z "" || rm -f > rm -f ./.deps/annotationmappings.Po > rm -f ./.deps/exp.Po > rm -f ./.deps/exp_flexer.Po > rm -f ./.deps/fasta.Po > rm -f ./.deps/fastq-mira.Po > rm -f ./.deps/generalio.Po > rm -f ./.deps/ncbiinfoxml.Po > rm -f ./.deps/phd.Po > rm -f ./.deps/scf.Po > rm -f Makefile > make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/io' > Making distclean in stdinc > make[4]: Entering directory '/<<PKGBUILDDIR>>/src/stdinc' > rm -rf .libs _libs > rm -f *.lo > test -z "" || rm -f > rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags > test . = "." || test -z "" || rm -f > rm -f Makefile > make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/stdinc' > Making distclean in errorhandling > make[4]: Entering directory '/<<PKGBUILDDIR>>/src/errorhandling' > rm -rf .libs _libs > test -z "libmiraerrorhandling.a" || rm -f libmiraerrorhandling.a > rm -f *.o > rm -f *.lo > rm -f *.tab.c > test -z "" || rm -f > rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags > test . = "." || test -z "" || rm -f > rm -f ./.deps/errorhandling.Po > rm -f Makefile > make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/errorhandling' > Making distclean in util > make[4]: Entering directory '/<<PKGBUILDDIR>>/src/util' > rm -rf .libs _libs > test -z "libmirautil.a libmiradptools.a libmirafmttext.a" || rm -f > libmirautil.a libmiradptools.a libmirafmttext.a > rm -f *.o > rm -f *.lo > rm -f *.tab.c > test -z "" || rm -f > rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags > test . = "." || test -z "" || rm -f > rm -f ./.deps/dptools.Po > rm -f ./.deps/fileanddisk.Po > rm -f ./.deps/fmttext.Po > rm -f ./.deps/machineinfo.Po > rm -f ./.deps/misc.Po > rm -f Makefile > make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/util' > Making distclean in mira > make[4]: Entering directory '/<<PKGBUILDDIR>>/src/mira' > rm -rf .libs _libs > rm -rf *flexer.cc *xxd.H > test -z "libmiraestass.a libmira.a" || rm -f libmiraestass.a libmira.a > rm -f *.o > rm -f *.lo > rm -f *.tab.c > test -z "" || rm -f > rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags > test . = "." || test -z "" || rm -f > rm -f ./.deps/ads.Po > rm -f ./.deps/adsfacts.Po > rm -f ./.deps/align.Po > rm -f ./.deps/assembly.Po > rm -f ./.deps/assembly_buildcontigs.Po > rm -f ./.deps/assembly_info.Po > rm -f ./.deps/assembly_io.Po > rm -f ./.deps/assembly_misc.Po > rm -f ./.deps/assembly_output.Po > rm -f ./.deps/assembly_pbcorrect.Po > rm -f ./.deps/assembly_reduceskimhits.Po > rm -f ./.deps/assembly_swalign.Po > rm -f ./.deps/contig.Po > rm -f ./.deps/contig_analysis.Po > rm -f ./.deps/contig_consensus.Po > rm -f ./.deps/contig_covanalysis.Po > rm -f ./.deps/contig_edit.Po > rm -f ./.deps/contig_featureinfo.Po > rm -f ./.deps/contig_output.Po > rm -f ./.deps/contig_pairconsistency.Po > rm -f ./.deps/dataprocessing.Po > rm -f ./.deps/dynamic.Po > rm -f ./.deps/estassembly.Po > rm -f ./.deps/gbf_parse.Po > rm -f ./.deps/gff_parse.Po > rm -f ./.deps/gff_save.Po > rm -f ./.deps/hashstats.Po > rm -f ./.deps/hashstats_sdbg.Po > rm -f ./.deps/maf_parse.Po > rm -f ./.deps/manifest.Po > rm -f ./.deps/multitag.Po > rm -f ./.deps/parameters.Po > rm -f ./.deps/parameters_flexer.Po > rm -f ./.deps/pcrcontainer.Po > rm -f ./.deps/ppathfinder.Po > rm -f ./.deps/preventinitfiasco.Po > rm -f ./.deps/read.Po > rm -f ./.deps/readgrouplib.Po > rm -f ./.deps/readlotstat.Po > rm -f ./.deps/readpool.Po > rm -f ./.deps/readpool_io.Po > rm -f ./.deps/sam_collect.Po > rm -f ./.deps/scaffolder.Po > rm -f ./.deps/seqtohash.Po > rm -f ./.deps/simplebloomfilter.Po > rm -f ./.deps/skim.Po > rm -f ./.deps/skim_lowbph.Po > rm -f ./.deps/warnings.Po > rm -f Makefile > make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/mira' > Making distclean in caf > make[4]: Entering directory '/<<PKGBUILDDIR>>/src/caf' > rm -rf .libs _libs > rm -rf *flexer.cc > test -z "libmiracaf.a" || rm -f libmiracaf.a > rm -f *.o > rm -f *.lo > rm -f *.tab.c > test -z "" || rm -f > rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags > test . = "." || test -z "" || rm -f > rm -f ./.deps/caf.Po > rm -f ./.deps/caf_flexer.Po > rm -f Makefile > make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/caf' > Making distclean in memorc > make[4]: Entering directory '/<<PKGBUILDDIR>>/src/memorc' > rm -rf .libs _libs > test -z "libmemorc.a" || rm -f libmemorc.a > rm -f *.o > rm -f *.lo > rm -f main > rm -f *.tab.c > test -z "" || rm -f > rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags > test . = "." || test -z "" || rm -f > rm -f ./.deps/main.Po > rm -f ./.deps/memorc.Po > rm -f Makefile > make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/memorc' > Making distclean in modules > make[4]: Entering directory '/<<PKGBUILDDIR>>/src/modules' > rm -rf .libs _libs > test -z "libmiramodules.a" || rm -f libmiramodules.a > rm -f *.o > rm -f *.lo > rm -f *.tab.c > test -z "" || rm -f > rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags > test . = "." || test -z "" || rm -f > rm -f ./.deps/misc.Po > rm -f ./.deps/mod_bait.Po > rm -f ./.deps/mod_convert.Po > rm -f ./.deps/mod_dbgreplay.Po > rm -f ./.deps/mod_diff.Po > rm -f ./.deps/mod_memestim.Po > rm -f ./.deps/mod_mer.Po > rm -f ./.deps/mod_mira.Po > rm -f ./.deps/mod_scaffold.Po > rm -f ./.deps/mod_sigconex.Po > rm -f ./.deps/mod_tagsnp.Po > rm -f Makefile > make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/modules' > Making distclean in support > make[4]: Entering directory '/<<PKGBUILDDIR>>/src/support' > rm -rf .libs _libs > rm -f *.lo > test -z "" || rm -f > test . = "." || test -z "" || rm -f > rm -f Makefile > make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/support' > Making distclean in scripts > make[4]: Entering directory '/<<PKGBUILDDIR>>/src/scripts' > rm -rf .libs _libs > rm -f *.lo > test -z "" || rm -f > test . = "." || test -z "" || rm -f > rm -f Makefile > make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/scripts' > Making distclean in version > make[4]: Entering directory '/<<PKGBUILDDIR>>/src/version' > rm -rf .libs _libs > test -z "libmiraversion.a" || rm -f libmiraversion.a > rm -f *.o > rm -f *.lo > rm -f *.tab.c > test -z "" || rm -f > rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags > test . = "." || test -z "" || rm -f > rm -f ./.deps/mversion.Po > rm -f Makefile > make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/version' > Making distclean in progs > make[4]: Entering directory '/<<PKGBUILDDIR>>/src/progs' > rm -rf .libs _libs > rm -f mira > rm -f *.o > rm -f miratest > rm -f *.lo > rm -f *.tab.c > test -z "" || rm -f > rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags > test . = "." || test -z "" || rm -f > rm -f ./.deps/compileinfo.itxt.xxd.Po > rm -f ./.deps/mira.Po > rm -f ./.deps/miratest.Po > rm -f ./.deps/quirks.Po > rm -f Makefile > make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/progs' > Making distclean in other > make[4]: Entering directory '/<<PKGBUILDDIR>>/src/other' > Making distclean in sls > make[5]: Entering directory '/<<PKGBUILDDIR>>/src/other/sls' > Making distclean in mira-createsls > make[6]: Entering directory '/<<PKGBUILDDIR>>/src/other/sls/mira-createsls' > Making distclean in bin > make[7]: Entering directory > '/<<PKGBUILDDIR>>/src/other/sls/mira-createsls/bin' > rm -rf .libs _libs > rm -f *.lo > test -z "" || rm -f > test . = "." || test -z "" || rm -f > rm -f Makefile > make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/other/sls/mira-createsls/bin' > make[7]: Entering directory '/<<PKGBUILDDIR>>/src/other/sls/mira-createsls' > rm -rf .libs _libs > rm -f *.lo > test -z "" || rm -f > rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags > test . = "." || test -z "" || rm -f > make[7]: Leaving directory '/<<PKGBUILDDIR>>/src/other/sls/mira-createsls' > rm -f Makefile > make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/other/sls/mira-createsls' > make[6]: Entering directory '/<<PKGBUILDDIR>>/src/other/sls' > rm -rf .libs _libs > rm -f *.lo > test -z "" || rm -f > rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags > test . = "." || test -z "" || rm -f > make[6]: Leaving directory '/<<PKGBUILDDIR>>/src/other/sls' > rm -f Makefile > make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/other/sls' > make[5]: Entering directory '/<<PKGBUILDDIR>>/src/other' > rm -rf .libs _libs > rm -f *.lo > test -z "" || rm -f > rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags > test . = "." || test -z "" || rm -f > make[5]: Leaving directory '/<<PKGBUILDDIR>>/src/other' > rm -f Makefile > make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/other' > make[4]: Entering directory '/<<PKGBUILDDIR>>/src' > rm -rf .libs _libs > rm -f *.lo > test -z "" || rm -f > rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags > test . = "." || test -z "" || rm -f > make[4]: Leaving directory '/<<PKGBUILDDIR>>/src' > rm -f Makefile > make[3]: Leaving directory '/<<PKGBUILDDIR>>/src' > make[3]: Entering directory '/<<PKGBUILDDIR>>' > rm -rf .libs _libs > find . -name "*~" -exec rm -rf {} \; > rm -f *.lo > test -z "" || rm -f > rm -f libtool config.lt > test . = "." || test -z "" || rm -f > find . -name ".pure" -exec rm -rf {} \; > rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags > rm -f cscope.out cscope.in.out cscope.po.out cscope.files > find . -name "*.o" -exec rm {} \; > find . -name "*.a" -exec rm {} \; > find . -name "bla_*" -exec rm {} \; > find . -name "bin.*" -exec rm {} \; > find . -name "log.*" -exec rm {} \; > find . -name "*.bak" -exec rm {} \; > find . -name "ttt*" -exec rm {} \; > find . -name "TTT*" -exec rm {} \; > find . -name "core" -exec rm {} \; > find . -name "*.flex.C" -exec rm {} \; > find . -name "*flexer.cc" -exec rm {} \; > find . -type d -name "*.dSYM" -exec rm -rf {} \; > make -C distribution clean > find . -name ".deps" -exec rm -rf {} \; > make[4]: Entering directory '/<<PKGBUILDDIR>>' > make[4]: warning: jobserver unavailable: using -j1. Add '+' to parent make > rule. > rm -rf mira_`../build-aux/git-version-gen isshort > ../.tarball-version`_linux-gnu_x86_64_dynamic *.tar *.gz > rm -rf OSXstatlibs OSXstatlibs_bach > rm -rf m4 > rm -rf Makefile Makefile.in aclocal.m4 config.status config.h config.h.in > config.log configure autom4te.cache config.guess config.sub missing libtool > rm -rf config > rm -rf mira_* > rm -rf 3rdparty* > make[4]: Leaving directory '/<<PKGBUILDDIR>>/distribution' > make -C doc clean > make[4]: Entering directory '/<<PKGBUILDDIR>>' > make[4]: warning: jobserver unavailable: using -j1. Add '+' to parent make > rule. > cd .. && make am--refresh > make[5]: Entering directory '/<<PKGBUILDDIR>>' > make[5]: *** No rule to make target 'am--refresh'. Stop. > make[5]: Leaving directory '/<<PKGBUILDDIR>>' > make[4]: *** [Makefile:366: ../aclocal.m4] Error 2 > make[4]: Leaving directory '/<<PKGBUILDDIR>>/doc' > make[3]: *** [Makefile:887: clean-local] Error 2 > make[3]: Leaving directory '/<<PKGBUILDDIR>>' > make[2]: *** [Makefile:416: distclean-recursive] Error 1 > make[2]: Leaving directory '/<<PKGBUILDDIR>>' > dh_auto_clean: error: make -j8 distclean returned exit code 2 > find * -name Makefile -exec rm '{}' ';' > find * -name '*.xxd.H' -exec rm '{}' ';' > find * -name '*.par.H' -exec rm '{}' ';' > find * -name 'compileinfo.*' -exec rm '{}' ';' > make[1]: Leaving directory '/<<PKGBUILDDIR>>' > dh_autoreconf_clean > rm -f -- ./install-sh ./m4/ltsugar.m4 ./m4/lt\~obsolete.m4 > ./m4/ltversion.m4 ./m4/libtool.m4 ./m4/ltoptions.m4 ./aclocal.m4 ./INSTALL > ./autom4te.cache/requests ./autom4te.cache/traces.2 ./autom4te.cache/output.2 > ./autom4te.cache/output.3 ./autom4te.cache/output.1 ./autom4te.cache/traces.1 > ./autom4te.cache/traces.3 ./autom4te.cache/output.0 ./autom4te.cache/traces.0 > ./Makefile.in ./compile ./ltmain.sh ./man/Makefile.in ./configure > ./src/memorc/Makefile.in ./src/version/Makefile.in ./src/progs/Makefile.in > ./src/caf/Makefile.in ./src/io/Makefile.in ./src/Makefile.in > ./src/support/Makefile.in ./src/modules/Makefile.in > ./src/errorhandling/Makefile.in ./src/other/sls/Makefile.in > ./src/other/sls/mira-createsls/Makefile.in > ./src/other/sls/mira-createsls/bin/Makefile.in ./src/other/Makefile.in > ./src/scripts/Makefile.in > ./src/stdinc/Makefile.in ./src/debuggersupport/Makefile.in > ./src/mira/Makefile.in ./src/util/Makefile.in ./mkinstalldirs > ./distribution/Makefile.in ./depcomp ./configure\~ ./doc/docbook/Makefile.in > ./doc/Makefile.in ./ylwrap ./missing > rm -f debian/autoreconf.before debian/autoreconf.after > dh_clean > rm -f debian/debhelper-build-stamp > cp -an --reflink=auto > debian/.debhelper/bucket/files/9be3de218833c076786b919dc34aab691611f4cd73316e7705f2673e2c41921b > > debian/.debhelper/bucket/files/9be3de218833c076786b919dc34aab691611f4cd73316e7705f2673e2c41921b.tmp > mv > debian/.debhelper/bucket/files/9be3de218833c076786b919dc34aab691611f4cd73316e7705f2673e2c41921b.tmp > config.guess > cp -an --reflink=auto > debian/.debhelper/bucket/files/e308ae7f7f524bd790f8d4457c7c0a30f8403ffff4dd0b7d4388daca24275db4 > > debian/.debhelper/bucket/files/e308ae7f7f524bd790f8d4457c7c0a30f8403ffff4dd0b7d4388daca24275db4.tmp > mv > debian/.debhelper/bucket/files/e308ae7f7f524bd790f8d4457c7c0a30f8403ffff4dd0b7d4388daca24275db4.tmp > config.sub > rm -f debian/.debhelper/bucket/index > rm -rf debian/.debhelper/ > rm -f -- debian/mira-assembler.substvars > debian/mira-rfam-12s-rrna.substvars debian/mira-doc.substvars > ./src/io/so.obo.xxd debian/files > rm -fr -- debian/mira-assembler/ debian/tmp/ debian/mira-rfam-12s-rrna/ > debian/mira-doc/ > find . \( \( \ > \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path > .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o > -type f -a \ > \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ > -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ > -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ > -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ > \) -exec rm -f {} + \) -o \ > \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) > \) > debian/rules binary > dh binary > dh_update_autotools_config > cp -an --reflink=auto config.guess > debian/.debhelper/bucket/files/9be3de218833c076786b919dc34aab691611f4cd73316e7705f2673e2c41921b.tmp > mv > debian/.debhelper/bucket/files/9be3de218833c076786b919dc34aab691611f4cd73316e7705f2673e2c41921b.tmp > > debian/.debhelper/bucket/files/9be3de218833c076786b919dc34aab691611f4cd73316e7705f2673e2c41921b > cp -f /usr/share/misc/config.guess ./config.guess > cp -an --reflink=auto config.sub > debian/.debhelper/bucket/files/e308ae7f7f524bd790f8d4457c7c0a30f8403ffff4dd0b7d4388daca24275db4.tmp > mv > debian/.debhelper/bucket/files/e308ae7f7f524bd790f8d4457c7c0a30f8403ffff4dd0b7d4388daca24275db4.tmp > > debian/.debhelper/bucket/files/e308ae7f7f524bd790f8d4457c7c0a30f8403ffff4dd0b7d4388daca24275db4 > cp -f /usr/share/misc/config.sub ./config.sub > dh_autoreconf > find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' > -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f > -exec md5sum {} + -o -type l -printf "symlink %p > " > debian/autoreconf.before > grep -q ^XDT_ configure.ac > autoreconf -f -i > aclocal: warning: couldn't open directory 'm4': No such file or directory > libtoolize: putting auxiliary files in '.'. > libtoolize: copying file './ltmain.sh' > libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. > libtoolize: copying file 'm4/libtool.m4' > libtoolize: copying file 'm4/ltoptions.m4' > libtoolize: copying file 'm4/ltsugar.m4' > libtoolize: copying file 'm4/ltversion.m4' > libtoolize: copying file 'm4/lt~obsolete.m4' > configure.ac:38: warning: The macro `AC_HELP_STRING' is obsolete. > configure.ac:38: You should run autoupdate. > ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... > configure.ac:38: the top level > configure.ac:46: warning: The macro `AC_HELP_STRING' is obsolete. > configure.ac:46: You should run autoupdate. > ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... > configure.ac:46: the top level > configure.ac:190: warning: The macro `AC_HELP_STRING' is obsolete. > configure.ac:190: You should run autoupdate. > ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... > configure.ac:190: the top level > configure.ac:328: warning: The macro `AC_TRY_COMPILE' is obsolete. > configure.ac:328: You should run autoupdate. > ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... > configure.ac:328: the top level > configure.ac:419: warning: The macro `AC_HELP_STRING' is obsolete. > configure.ac:419: You should run autoupdate. > ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... > configure.ac:419: the top level > configure.ac:423: warning: The macro `AC_HELP_STRING' is obsolete. > configure.ac:423: You should run autoupdate. > ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... > configure.ac:423: the top level > configure.ac:663: warning: AC_PROG_LEX without either yywrap or noyywrap is > obsolete > ./lib/autoconf/programs.m4:716: _AC_PROG_LEX is expanded from... > ./lib/autoconf/programs.m4:709: AC_PROG_LEX is expanded from... > configure.ac:663: the top level > configure.ac:670: warning: The macro `AC_HEADER_STDC' is obsolete. > configure.ac:670: You should run autoupdate. > ./lib/autoconf/headers.m4:704: AC_HEADER_STDC is expanded from... > configure.ac:670: the top level > configure.ac:715: warning: The macro `AC_TRY_LINK' is obsolete. > configure.ac:715: You should run autoupdate. > ./lib/autoconf/general.m4:2920: AC_TRY_LINK is expanded from... > lib/m4sugar/m4sh.m4:692: _AS_IF_ELSE is expanded from... > lib/m4sugar/m4sh.m4:699: AS_IF is expanded from... > ./lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from... > ./lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from... > configure.ac:702: SUDO_FUNC_ISBLANK is expanded from... > configure.ac:715: the top level > configure.ac:1045: warning: The macro `AC_LANG_C' is obsolete. > configure.ac:1045: You should run autoupdate. > ./lib/autoconf/c.m4:72: AC_LANG_C is expanded from... > configure.ac:1045: the top level > configure.ac:1134: warning: The macro `AC_HELP_STRING' is obsolete. > configure.ac:1134: You should run autoupdate. > ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... > configure.ac:1134: the top level > configure.ac:1143: warning: The macro `AC_HELP_STRING' is obsolete. > configure.ac:1143: You should run autoupdate. > ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... > configure.ac:1143: the top level > configure.ac:1154: warning: The macro `AC_HELP_STRING' is obsolete. > configure.ac:1154: You should run autoupdate. > ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... > configure.ac:1154: the top level > configure.ac:1197: warning: The macro `AC_HELP_STRING' is obsolete. > configure.ac:1197: You should run autoupdate. > ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... > configure.ac:1197: the top level > configure.ac:1248: warning: The macro `AC_HELP_STRING' is obsolete. > configure.ac:1248: You should run autoupdate. > ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... > configure.ac:1248: the top level > configure.ac:1347: warning: The macro `AC_HELP_STRING' is obsolete. > configure.ac:1347: You should run autoupdate. > ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... > configure.ac:1347: the top level > configure.ac:1366: warning: The macro `AC_HELP_STRING' is obsolete. > configure.ac:1366: You should run autoupdate. > ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... > configure.ac:1366: the top level > configure.ac:1383: warning: The macro `AC_HELP_STRING' is obsolete. > configure.ac:1383: You should run autoupdate. > ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... > configure.ac:1383: the top level > configure.ac:1401: warning: The macro `AC_HELP_STRING' is obsolete. > configure.ac:1401: You should run autoupdate. > ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... > configure.ac:1401: the top level > configure.ac:1417: warning: The macro `AC_HELP_STRING' is obsolete. > configure.ac:1417: You should run autoupdate. > ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... > configure.ac:1417: the top level > configure.ac:1428: warning: The macro `AC_HELP_STRING' is obsolete. > configure.ac:1428: You should run autoupdate. > ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... > configure.ac:1428: the top level > configure.ac:1466: warning: AC_OUTPUT should be used without arguments. > configure.ac:1466: You should run autoupdate. > configure.ac:103: installing './compile' > configure.ac:9: installing './install-sh' > configure.ac:9: installing './missing' > Makefile.am: installing './INSTALL' > doc/docbook/Makefile.am:22: warning: '%'-style pattern rules are a GNU make > extension > src/caf/Makefile.am: installing './depcomp' > configure.ac: installing './ylwrap' > src/io/Makefile.am:12: warning: '%'-style pattern rules are a GNU make > extension > src/mira/Makefile.am:10: warning: '%'-style pattern rules are a GNU make > extension > find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' > -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f > -exec md5sum {} + -o -type l -printf "symlink %p > " > debian/autoreconf.after > debian/rules override_dh_auto_configure > make[1]: Entering directory '/<<PKGBUILDDIR>>' > dh_auto_configure -- --with-boost-libdir=/usr/lib/x86_64-linux-gnu > --with-boost=/usr > ./configure --build=x86_64-linux-gnu --prefix=/usr > --includedir=\${prefix}/include --mandir=\${prefix}/share/man > --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var > --disable-option-checking --disable-silent-rules > --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run > --disable-maintainer-mode --disable-dependency-tracking > --with-boost-libdir=/usr/lib/x86_64-linux-gnu --with-boost=/usr > checking for a BSD-compatible install... /usr/bin/install -c > checking whether build environment is sane... yes > checking for a race-free mkdir -p... /bin/mkdir -p > checking for gawk... no > checking for mawk... mawk > checking whether make sets $(MAKE)... yes > checking whether make supports nested variables... yes > checking whether UID '1001' is supported by ustar format... yes > checking whether GID '1001' is supported by ustar format... yes > checking how to create a ustar tar archive... gnutar > checking for a sed that does not truncate output... /bin/sed > checking whether to add --prefix as include path... yes > > +++++++++++++++++++++++++++++++++++++ > systemuname: Linux > CFLAGS now: -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. > -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include > CXXFLAGS now: -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. > -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include > LDFLAGS now: -Wl,-z,relro -Wl,-z,now -L/usr/lib > +++++++++++++++++++++++++++++++++++++ > checking for gcc... gcc > checking whether the C compiler works... yes > checking for C compiler default output file name... a.out > checking for suffix of executables... > checking whether we are cross compiling... no > checking for suffix of object files... o > checking whether the compiler supports GNU C... yes > checking whether gcc accepts -g... yes > checking for gcc option to enable C11 features... none needed > checking whether gcc understands -c and -o together... yes > checking whether make supports the include directive... yes (GNU style) > checking dependency style of gcc... none > checking for g++... g++ > checking whether the compiler supports GNU C++... yes > checking whether g++ accepts -g... yes > checking for g++ option to enable C++11 features... none needed > checking dependency style of g++... none > checking for OpenMP flag of C compiler... -fopenmp > Rescuing C++ flags for OpenMP > +++++++++++++++++++++++++++++++++++++ > OpenMP CFLAGS: -fopenmp > OpenMP CXXFLAGS: -fopenmp > +++++++++++++++++++++++++++++++++++++ > > +++++++++++++++++++++++++++++++++++++ > systemuname: Linux > CFLAGS now: -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. > -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include > CXXFLAGS now: -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. > -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include > LDFLAGS now: -Wl,-z,relro -Wl,-z,now -L/usr/lib > +++++++++++++++++++++++++++++++++++++ > checking for stdio.h... yes > checking for stdlib.h... yes > checking for string.h... yes > checking for inttypes.h... yes > checking for stdint.h... yes > checking for strings.h... yes > checking for sys/stat.h... yes > checking for sys/types.h... yes > checking for unistd.h... yes > checking for int64_t... yes > > +++++++++++++++++++++++++++++++++++++ > CFLAGS now: -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. > -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include > CXXFLAGS now: -DAJ_Linux64 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. > -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include > LDFLAGS now: -Wl,-z,relro -Wl,-z,now -L/usr/lib > +++++++++++++++++++++++++++++++++++++ > checking whether long has 64bit... yes > checking whether enabling 64bit compilation support... yes > checking build system type... x86_64-pc-linux-gnu > checking for compiler optimisation settings... -O3 -funroll-loops > > +++++++++++++++++++++++++++++++++++++ > CFLAGS now: -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. > -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 > -funroll-loops > CXXFLAGS now: -DAJ_Linux64 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. > -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 > -funroll-loops > LDFLAGS now: -Wl,-z,relro -Wl,-z,now -L/usr/lib > +++++++++++++++++++++++++++++++++++++ > checking host system type... x86_64-pc-linux-gnu > checking how to print strings... printf > checking for a sed that does not truncate output... (cached) /bin/sed > checking for grep that handles long lines and -e... /bin/grep > checking for egrep... /bin/grep -E > checking for fgrep... /bin/grep -F > checking for ld used by gcc... /usr/bin/ld > checking if the linker (/usr/bin/ld) is GNU ld... yes > checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B > checking the name lister (/usr/bin/nm -B) interface... BSD nm > checking whether ln -s works... yes > checking the maximum length of command line arguments... 1572864 > checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu > format... func_convert_file_noop > checking how to convert x86_64-pc-linux-gnu file names to toolchain format... > func_convert_file_noop > checking for /usr/bin/ld option to reload object files... -r > checking for file... file > checking for objdump... objdump > checking how to recognize dependent libraries... pass_all > checking for dlltool... no > checking how to associate runtime and link libraries... printf %s\n > checking for ar... ar > checking for archiver @FILE support... @ > checking for strip... strip > checking for ranlib... ranlib > checking command to parse /usr/bin/nm -B output from gcc object... ok > checking for sysroot... no > checking for a working dd... /bin/dd > checking how to truncate binary pipes... /bin/dd bs=4096 count=1 > checking for mt... no > checking if : is a manifest tool... no > checking for dlfcn.h... yes > checking for objdir... .libs > checking if gcc supports -fno-rtti -fno-exceptions... no > checking for gcc option to produce PIC... -fPIC -DPIC > checking if gcc PIC flag -fPIC -DPIC works... yes > checking if gcc static flag -static works... yes > checking if gcc supports -c -o file.o... yes > checking if gcc supports -c -o file.o... (cached) yes > checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared > libraries... yes > checking whether -lc should be explicitly linked in... no > checking dynamic linker characteristics... GNU/Linux ld.so > checking how to hardcode library paths into programs... immediate > checking whether stripping libraries is possible... yes > checking if libtool supports shared libraries... yes > checking whether to build shared libraries... yes > checking whether to build static libraries... yes > checking how to run the C++ preprocessor... g++ -E > checking for ld used by g++... /usr/bin/ld -m elf_x86_64 > checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes > checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared > libraries... yes > checking for g++ option to produce PIC... -fPIC -DPIC > checking if g++ PIC flag -fPIC -DPIC works... yes > checking if g++ static flag -static works... yes > checking if g++ supports -c -o file.o... yes > checking if g++ supports -c -o file.o... (cached) yes > checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared > libraries... yes > checking dynamic linker characteristics... (cached) GNU/Linux ld.so > checking how to hardcode library paths into programs... immediate > checking whether make sets $(MAKE)... (cached) yes > checking whether ln -s works... yes > checking for flex... yes > checking for flex... flex > checking for lex output file root... lex.yy > checking for lex library... none needed > checking for library containing yywrap... -ll > checking whether yytext is a pointer... yes > checking for flex++... yes > checking for xxd... yes > checking for egrep... (cached) /bin/grep -E > checking for _Bool... yes > checking for stdbool.h that conforms to C99... yes > checking for an ANSI C-conforming const... yes > checking for inline... inline > checking for C/C++ restrict keyword... __restrict__ > checking whether struct tm is in sys/time.h or time.h... time.h > checking for GNU libc compatible malloc... yes > checking for GNU libc compatible realloc... yes > checking whether lstat correctly handles trailing slash... yes > checking whether stat accepts an empty string... no > checking for strftime... yes > checking for floor... no > checking for memset... yes > checking for pow... no > checking for sqrt... no > checking for special C compiler options needed for large files... no > checking for _FILE_OFFSET_BITS value needed for large files... no > checking for _LARGEFILE_SOURCE value needed for large files... no > checking for isblank... yes > > +++++++++++++++++++++++++++++++++++++ > CFLAGS now: -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. > -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 > -funroll-loops > CXXFLAGS now: -DAJ_Linux64 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. > -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 > -funroll-loops > LDFLAGS now: -Wl,-z,relro -Wl,-z,now -L/usr/lib > +++++++++++++++++++++++++++++++++++++ > checking for boostlib >= 1.48.0 (104800) includes in "/usr/include"... yes > checking for boostlib >= 1.48.0 (104800) lib path in > "/usr/lib/x86_64-linux-gnu"... yes > checking for boostlib >= 1.48.0 (104800)... yes > > +++++++++++++++++++++++++++++++++++++ > BOOST_CPPFLAGS: -I/usr/include > BOOST LDFLAGS: -L/usr/lib/x86_64-linux-gnu > ac_boost_path: > ac_boost_lib_path: > CFLAGS now: -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. > -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 > -funroll-loops > CXXFLAGS now: -DAJ_Linux64 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. > -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 > -funroll-loops > LDFLAGS now: -Wl,-z,relro -Wl,-z,now -L/usr/lib > +++++++++++++++++++++++++++++++++++++ > > +++++++++++++++++++++++++++++++++++++ > BOOST_CPPFLAGS: -I/usr/include > BOOST LDFLAGS: -L/usr/lib/x86_64-linux-gnu > CFLAGS now: -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. > -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 > -funroll-loops -Wl,-rpath, > CXXFLAGS now: -DAJ_Linux64 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. > -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 > -funroll-loops > LDFLAGS now: -Wl,-z,relro -Wl,-z,now -L/usr/lib > +++++++++++++++++++++++++++++++++++++ > checking whether the Boost::Thread library is available... yes > checking for exit in -lboost_thread... yes > > +++++++++++++++++++++++++++++++++++++ > BOOST_CPPFLAGS: -pthread -I/usr/include > BOOST LDFLAGS: -L/usr/lib/x86_64-linux-gnu > ac_boost_path: > ac_boost_lib_path: > BOOST_THREAD_LIB: -lboost_thread -lpthread > CFLAGS now: -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. > -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 > -funroll-loops -Wl,-rpath, > CXXFLAGS now: -DAJ_Linux64 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. > -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 > -funroll-loops > LDFLAGS now: -Wl,-z,relro -Wl,-z,now -L/usr/lib > +++++++++++++++++++++++++++++++++++++ > +++++++++++++++++++++++++++++++++++++ > BOOST_CPPFLAGS: -pthread -I/usr/include > BOOST LDFLAGS: -L/usr/lib/x86_64-linux-gnu > ac_boost_path: > ac_boost_lib_path: > BOOST_THREAD_LIB: -lboost_thread -lpthread > > CFLAGS now: -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. > -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 > -funroll-loops -Wl,-rpath, > CXXFLAGS now: -DAJ_Linux64 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. > -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 > -funroll-loops -pthread -I/usr/include > LDFLAGS now: -Wl,-z,relro -Wl,-z,now -L/usr/lib -L/usr/lib/x86_64-linux-gnu > LIBS now: -lboost_thread -lpthread > +++++++++++++++++++++++++++++++++++++ > checking whether the Boost::Regex library is available... yes > checking for exit in -lboost_regex... yes > +++++++++++++++++++++++++++++++++++++ > BOOST_CPPFLAGS: -pthread -I/usr/include > BOOST LDFLAGS: -L/usr/lib/x86_64-linux-gnu > ac_boost_path: > ac_boost_lib_path: > BOOST_REGEX_LIB: -lboost_regex > > CFLAGS now: -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. > -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 > -funroll-loops -Wl,-rpath, > CXXFLAGS now: -DAJ_Linux64 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. > -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 > -funroll-loops -pthread -I/usr/include > LIBS now: -lboost_thread -lpthread -lboost_regex > +++++++++++++++++++++++++++++++++++++ > checking whether the Boost::System library is available... yes > checking for exit in -lboost_system... yes > +++++++++++++++++++++++++++++++++++++ > BOOST_CPPFLAGS: -pthread -I/usr/include > BOOST LDFLAGS: -L/usr/lib/x86_64-linux-gnu > ac_boost_path: > ac_boost_lib_path: > BOOST_SYSTEM_LIB: -lboost_system > > CFLAGS now: -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. > -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 > -funroll-loops -Wl,-rpath, > CXXFLAGS now: -DAJ_Linux64 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. > -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 > -funroll-loops -pthread -I/usr/include > LIBS now: -lboost_thread -lpthread -lboost_regex -lboost_system > +++++++++++++++++++++++++++++++++++++ > checking whether the Boost::Filesystem library is available... yes > checking for exit in -lboost_filesystem... yes > +++++++++++++++++++++++++++++++++++++ > BOOST_CPPFLAGS: -pthread -I/usr/include > BOOST LDFLAGS: -L/usr/lib/x86_64-linux-gnu > ac_boost_path: > ac_boost_lib_path: > BOOST_FILESYSTEM_LIB: -lboost_filesystem > > CFLAGS now: -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. > -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 > -funroll-loops -Wl,-rpath, > CXXFLAGS now: -DAJ_Linux64 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. > -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 > -funroll-loops -pthread -I/usr/include > LIBS now: -lboost_thread -lpthread -lboost_regex -lboost_system > -lboost_filesystem > +++++++++++++++++++++++++++++++++++++ > checking whether the Boost::IOStreams library is available... yes > checking for exit in -lboost_iostreams... yes > +++++++++++++++++++++++++++++++++++++ > BOOST_CPPFLAGS: -pthread -I/usr/include > BOOST LDFLAGS: -L/usr/lib/x86_64-linux-gnu > ac_boost_path: > ac_boost_lib_path: > BOOST_IOSTREAMS_LIB: -lboost_iostreams > > CFLAGS now: -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. > -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 > -funroll-loops -Wl,-rpath, > CXXFLAGS now: -DAJ_Linux64 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. > -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 > -funroll-loops -pthread -I/usr/include > LIBS now: -lboost_thread -lpthread -lboost_regex -lboost_system > -lboost_filesystem -lboost_iostreams > +++++++++++++++++++++++++++++++++++++ > checking for clock_gettime in -lrt... yes > +++++++++++++++++++++++++++++++++++++ > Need to specifically use rt library > LIBS now: -lboost_thread -lpthread -lboost_regex -lboost_system > -lboost_filesystem -lboost_iostreams -lrt > +++++++++++++++++++++++++++++++++++++ > BOOST is through, yay. > +++++++++++++++++++++++++++++++++++++ > CFLAGS now: -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. > -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 > -funroll-loops > CXXFLAGS now: -DAJ_Linux64 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. > -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 > -funroll-loops -pthread -I/usr/include > LDFLAGS now: -Wl,-z,relro -Wl,-z,now -L/usr/lib -L/usr/lib/x86_64-linux-gnu > LIBS now: -lboost_thread -lpthread -lboost_regex -lboost_system > -lboost_filesystem -lboost_iostreams -lrt > +++++++++++++++++++++++++++++++++++++ > checking for Expat XML Parser headers in /usr/include... found > checking for Expat XML Parser libraries... found > checking for Expat XML Parser... yes > > +++++++++++++++++++++++++++++++++++++ > CFLAGS now: -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. > -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 > -funroll-loops -I/usr/include > CXXFLAGS now: -DAJ_Linux64 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. > -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 > -funroll-loops -pthread -I/usr/include -I/usr/include > LDFLAGS now: -Wl,-z,relro -Wl,-z,now -L/usr/lib -L/usr/lib/x86_64-linux-gnu > -L/usr/lib > LIBS now: -lboost_thread -lpthread -lboost_regex -lboost_system > -lboost_filesystem -lboost_iostreams -lrt -lexpat > +++++++++++++++++++++++++++++++++++++ > checking if zlib is wanted... yes > checking for inflateEnd in -lz... yes > checking for zlib.h... yes > > +++++++++++++++++++++++++++++++++++++ > CFLAGS now: -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. > -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 > -funroll-loops -I/usr/include > CXXFLAGS now: -DAJ_Linux64 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. > -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 > -funroll-loops -pthread -I/usr/include -I/usr/include > LDFLAGS now: -Wl,-z,relro -Wl,-z,now -L/usr/lib -L/usr/lib/x86_64-linux-gnu > -L/usr/lib -L/usr/lib -L/usr/lib > LIBS now: -lz -lboost_thread -lpthread -lboost_regex -lboost_system > -lboost_filesystem -lboost_iostreams -lrt -lexpat -lm -lz > +++++++++++++++++++++++++++++++++++++ > checking for gzoffset in -lz... yes > checking for BZ2_bzRead in -lbz2... yes > checking for flex version compatible with MIRA... yes > checking for profiling settings... no > checking for purify... no > checking whether mira should compile in public quiet mode... yes > checking whether mira should compile with bound tracking... yes > checking whether mira should compile with bug tracking... yes > checking whether mira should compile with extended bug tracking... no > checking whether mira should compile with function trace... no > checking that generated files are newer than configure... done > configure: creating ./config.status > config.status: creating Makefile > config.status: creating src/Makefile > config.status: creating src/other/Makefile > config.status: creating src/other/sls/Makefile > config.status: creating src/other/sls/mira-createsls/Makefile > config.status: creating src/other/sls/mira-createsls/bin/Makefile > config.status: creating src/stdinc/Makefile > config.status: creating src/debuggersupport/Makefile > config.status: creating src/memorc/Makefile > config.status: creating src/errorhandling/Makefile > config.status: creating src/util/Makefile > config.status: creating src/io/Makefile > config.status: creating src/mira/Makefile > config.status: creating src/caf/Makefile > config.status: creating src/support/Makefile > config.status: creating src/scripts/Makefile > config.status: creating src/modules/Makefile > config.status: creating src/version/Makefile > config.status: creating src/progs/Makefile > config.status: creating man/Makefile > config.status: creating doc/Makefile > config.status: creating doc/docbook/Makefile > config.status: creating distribution/Makefile > config.status: executing depfiles commands > config.status: executing libtool commands > > -------------------------------------------------------------------------------- > Summary of MIRA configuration > -------------------------------------------------------------------------------- > > > Building version ................................. > 4.9.6_linux-gnu_x86_64_dynamic > > We are building on ............................... Linux > CPU supports 64 bit? ............................. yes > Compiler family .................................. gcc > Compiler optimisation flags used ................. -O3 -funroll-loops > Do we compile in 64 bit? ......................... yes > Building completely static? ...................... no > BOOST expected to compile and link? .............. yes > Have OpenMP? ..................................... yes > Have complete zlib support? ...................... yes > > Can MIRA be built on this system? ................ yes > > Using CFLAGS : -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. > -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -O3 > -funroll-loops -I/usr/include -Werror=uninitialized -Werror=return-type > -fopenmp > Using CXXFLAGS : -DPUBLICQUIET -DAJ_Linux64 -g -O2 > -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat > -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread > -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type > -Werror=parentheses -Werror=unused-value -std=c++14 -fopenmp > Using LDFLAGS : -Wl,-z,relro -Wl,-z,now -L/usr/lib > -L/usr/lib/x86_64-linux-gnu -L/usr/lib -L/usr/lib -L/usr/lib > Using LIBS : -lz -lboost_thread -lpthread -lboost_regex -lboost_system > -lboost_filesystem -lboost_iostreams -lrt -lexpat -lm -lz -lbz2 > > Looks good, we do not expect compilation problems. > -------------------------------------------------------------------------------- > > Type 'make' to make the binaries > and then 'make install' to install binaries and man pages. > Type 'make docinstall' to install extensive documentation as HTML and PDF. > make[1]: Leaving directory '/<<PKGBUILDDIR>>' > rm -f debian/mira-assembler.debhelper.log debian/mira-doc.debhelper.log > debian/mira-rfam-12s-rrna.debhelper.log > debian/rules override_dh_auto_build-arch > make[1]: Entering directory '/<<PKGBUILDDIR>>' > # some *.cc files are created by old flex version which breaks the build > # see bug #812681 > find -name '*.ll' | sed -e 's/[.]ll$/.cc/' | xargs rm > rm: cannot remove './src/caf/caf_flexer.cc': No such file or directory > rm: cannot remove './src/io/exp_flexer.cc': No such file or directory > rm: cannot remove './src/mira/parameters_flexer.cc': No such file or directory > make[1]: *** [debian/rules:44: override_dh_auto_build-arch] Error 123 > make[1]: Leaving directory '/<<PKGBUILDDIR>>' > make: *** [debian/rules:17: binary] Error 2 > dpkg-buildpackage: error: debian/rules binary subprocess returned exit status > 2 > > E: Command 'cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage > --sanitize-env -us -uc -rfakeroot -b' failed to run. The full build log is available from: http://qa-logs.debian.net/2023/08/16/mira_4.9.6-10_unstable.log If you reassign this bug to another package, please mark it as 'affects'-ing this package. See https://www.debian.org/Bugs/server-control#affects If you fail to reproduce this, please provide a build log and diff it with mine so that we can identify if something relevant changed in the meantime.
