Source: bolt-lmm Version: 2.4.1+dfsg-1 Severity: minor Tags: trixie sid ftbfs User: [email protected] Usertags: ftbfs-binary-20230816 ftbfs-binary-after-build User: [email protected] Usertags: qa-doublebuild
Hi, This package fails to do build a binary-only build (not source) after a successful build (dpkg-buildpackage ; dpkg-buildpackage -b). This is probably a clear violation of Debian Policy section 4.9 (clean target), but this is filed as severity:minor for now, because a discussion on debian-devel showed that we might want to revisit the requirement of a working 'clean' target. More information about this class of issues, included common problems and solutions, is available at https://wiki.debian.org/qa.debian.org/FTBFS/DoubleBuild Relevant part of the build log: > cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env > -us -uc -rfakeroot -b > ---------------------------------------------------------------------------------------------------------------------------- > > dpkg-buildpackage: info: source package bolt-lmm > dpkg-buildpackage: info: source version 2.4.1+dfsg-1 > dpkg-buildpackage: info: source distribution unstable > dpkg-buildpackage: info: source changed by Andreas Tille <[email protected]> > dpkg-source --before-build . > dpkg-buildpackage: info: host architecture amd64 > debian/rules clean > dh clean --sourcedirectory=src > dh_auto_clean -O--sourcedirectory=src > cd src && make -j8 clean > make[1]: Entering directory '/<<PKGBUILDDIR>>/src' > rm -f *.o > rm -f bolt > make[1]: Leaving directory '/<<PKGBUILDDIR>>/src' > dh_autoreconf_clean -O--sourcedirectory=src > dh_clean -O--sourcedirectory=src > debian/rules binary > dh binary --sourcedirectory=src > dh_update_autotools_config -O--sourcedirectory=src > dh_autoreconf -O--sourcedirectory=src > dh_auto_configure -O--sourcedirectory=src > debian/rules override_dh_auto_build-indep > make[1]: Entering directory '/<<PKGBUILDDIR>>' > cd /<<PKGBUILDDIR>>/example/ && \ > tar Jcvf examples.tar.xz * --sort=name --mode=go=rX,u+rw,a-s > --owner=root --group=root --numeric-owner > EUR_subset.bed > EUR_subset.bim > EUR_subset.dosage.chr17first100 > EUR_subset.dosage.chr22last100.gz > EUR_subset.dosage.indivs > EUR_subset.dosage2.chr17first100.gz > EUR_subset.dosage2.chr17first100.map > EUR_subset.dosage2.chr17second100 > EUR_subset.dosage2.chr17second100.map > EUR_subset.dosage2.chr22last100.gz > EUR_subset.dosage2.chr22last100.map > EUR_subset.dosage2FileList.txt > EUR_subset.exclude > EUR_subset.exclude2 > EUR_subset.fam > EUR_subset.impute2.chr17first100.gz > EUR_subset.impute2.chr17second100 > EUR_subset.impute2.chr22last100.gz > EUR_subset.impute2.indivs > EUR_subset.impute2FileList.txt > EUR_subset.modelSnps > EUR_subset.modelSnps2 > EUR_subset.pheno.covars > EUR_subset.pheno2.covars > EUR_subset.remove > example.dosage2Snps.stats > example.dosageSnps.stats > example.impute2Snps.stats > example.log > example.stats > example_reml2.log > examples.tar.xz > tar: examples.tar.xz: file changed as we read it > run_example.sh > run_example_reml2.sh > make[1]: *** [debian/rules:13: override_dh_auto_build-indep] Error 1 > make[1]: Leaving directory '/<<PKGBUILDDIR>>' > make: *** [debian/rules:10: binary] Error 2 > dpkg-buildpackage: error: debian/rules binary subprocess returned exit status > 2 > > E: Command 'cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage > --sanitize-env -us -uc -rfakeroot -b' failed to run. The full build log is available from: http://qa-logs.debian.net/2023/08/16/bolt-lmm_2.4.1+dfsg-1_unstable.log If you reassign this bug to another package, please mark it as 'affects'-ing this package. See https://www.debian.org/Bugs/server-control#affects If you fail to reproduce this, please provide a build log and diff it with mine so that we can identify if something relevant changed in the meantime.
