Package: igdiscover Version: 0.11-4 Severity: serious Usertags: ftbfs-bookworm
Dear Maintainer, igdiscover vendors just a /usr/bin/igdiscover with is supposed to be nothing more than just a wrapper. The actual code is missing from the binary package (i.e. the python files) effectively making igdiscover useless. Even after fixing that, igdiscover is still broken because of a broken Snakefile and it is not able to run the pipeline/workflow which is the main functionality here (it is a workflow tool). Steps to check can be found here[1]. Remember to change merge tool to 'flash' (and apt-get install flash) before running `igdiscover run`. It chokes at not being able to find "igblastn" -- it might be originatin from ncbi-igblast. I've fixed the first part (py files installation) and pushed changes to salsa in a different branch here[2]. I do not have any more time to look into it. [1]: https://docs.igdiscover.se/en/stable/testing.html [2]: https://salsa.debian.org/med-team/igdiscover/-/tree/bookworm-release -- System Information: Debian Release: bookworm/sid APT prefers testing APT policy: (500, 'testing') Architecture: amd64 (x86_64) Kernel: Linux 6.1.0-2-amd64 (SMP w/8 CPU threads; PREEMPT) Locale: LANG=en_IN, LC_CTYPE=en_IN (charmap=UTF-8), LANGUAGE not set Shell: /bin/sh linked to /usr/bin/dash Init: systemd (via /run/systemd/system) LSM: AppArmor: enabled Versions of packages igdiscover depends on: ii python3 3.11.1-2 pn python3-cutadapt <none> pn python3-matplotlib <none> ii python3-numpy 1:1.24.1-2+b1 pn python3-pandas <none> pn python3-ruamel.yaml <none> pn python3-scipy <none> pn python3-seaborn <none> pn python3-sqt <none> pn python3-xopen <none> igdiscover recommends no packages. Versions of packages igdiscover suggests: pn igdiscover-doc <none> pn snakemake <none>
