it's ugly and obviously not the "right" answer, but i recently found that even when using a remote source one can (at least w/backupninja 1.0.1-2) use the sshoptions in the [dest] section to pass in the desired options, e.g.:
[dest] type = local directory = /srv/backups/rdiff-backup/osmc sshoptions = -o IdentityFile=/root/.ssh/id_ed25519-backup hth, andy -- andy <and...@diatribes.org> diatribes