Hi Aaron, Hi Andreas, Andreas Tille, on 2021-10-19: > Am Tue, Oct 19, 2021 at 07:55:07AM -0400 schrieb Aaron M. Ucko: > > Étienne Mollier <[email protected]> writes: > > > > > E - LOCUS NC_007194 60 bp DNA > > > linear CON 03-APR-2018 > > > E ? ^^^^^^^ > > > ^^ ^^^ ^^ > > > E + LOCUS NC_007194 4918979 bp DNA > > > linear CON 11-NOV-2009 > > > E ? ^^^^^^^ > > > ^^ ^^^ ^^ > > > > It looks like this test is intended to work offline (as required) and > > yield short mock records, but for some reason winds up fetching > > full-length live data instead.
As always, thanks for your analysis! I confirm the test suite works offline, so withdraw my suspicion. > Strangely enough this issue seems to depend from the biopython version. > Any idea what might be wrong here? After some digging, I found one possible cause of breakage. Since biopython 1.79, Bio.Seq.UnknownSeq is deprecated [1], so it might be possible that ncbi-acc-download does not parse the instanciation of that class very well. [1]: https://github.com/biopython/biopython/blob/master/DEPRECATED.rst#biosequnknownseq Looks like I would want to take the issue upstream. Have a nice day, :) -- Étienne Mollier <[email protected]> Fingerprint: 8f91 b227 c7d6 f2b1 948c 8236 793c f67e 8f0d 11da Sent from /dev/tty1, please excuse my verbosity.
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