Source: pymol Version: 2.4.0+dfsg-1 Severity: serious Tags: sid bullseye X-Debbugs-CC: debian...@lists.debian.org User: debian...@lists.debian.org Usertags: flaky
Dear maintainer(s), Your package has an autopkgtest, great. However, because of the failure "caused" by glbic, I looked into the history of your autopkgtest [1] and I noticed it fails regularly on arm64 because it hits the autopkgtest timeout after 2:47 hours. Because the unstable-to-testing migration software now blocks on regressions in testing, flaky tests, i.e. tests that flip between passing and failing without changes to the list of installed packages, are causing people unrelated to your package to spend time on these tests. Paul [1] https://ci.debian.net/packages/p/pymol/testing/arm64/ https://ci.debian.net/data/autopkgtest/testing/arm64/p/pymol/11477449/log.gz Run 'pymol -c /tmp/autopkgtest-lxc.q81vxtos/downtmp/build.HQz/src/examples/cookbook/build_peptide.py'... Skip /tmp/autopkgtest-lxc.q81vxtos/downtmp/build.HQz/src/examples/cookbook/contact.pml Skip /tmp/autopkgtest-lxc.q81vxtos/downtmp/build.HQz/src/examples/cookbook/dali.py Skip /tmp/autopkgtest-lxc.q81vxtos/downtmp/build.HQz/src/examples/cookbook/density.pml Skip /tmp/autopkgtest-lxc.q81vxtos/downtmp/build.HQz/src/examples/cookbook/groel_es.pml Skip /tmp/autopkgtest-lxc.q81vxtos/downtmp/build.HQz/src/examples/cookbook/multiclip_ray.pml Skip /tmp/autopkgtest-lxc.q81vxtos/downtmp/build.HQz/src/examples/cookbook/packing.pml Skip /tmp/autopkgtest-lxc.q81vxtos/downtmp/build.HQz/src/examples/cookbook/packsurf.pml Skip /tmp/autopkgtest-lxc.q81vxtos/downtmp/build.HQz/src/examples/cookbook/ref_frame.pml Skip /tmp/autopkgtest-lxc.q81vxtos/downtmp/build.HQz/src/examples/cookbook/ribosome.pml <string>:1: DeprecationWarning: the imp module is deprecated in favour of importlib; see the module's documentation for alternative uses Run 'pymol -c /tmp/autopkgtest-lxc.q81vxtos/downtmp/build.HQz/src/examples/cookbook/scenes2movie.pml'... <string>:1: DeprecationWarning: the imp module is deprecated in favour of importlib; see the module's documentation for alternative uses autopkgtest [04:22:04]: ERROR: timed out on command "su -s /bin/bash debci -c set -e; export USER=`id -nu`; . /etc/profile >/dev/null 2>&1 || true; . ~/.profile >/dev/null 2>&1 || true; buildtree="/tmp/autopkgtest-lxc.q81vxtos/downtmp/build.HQz/src"; mkdir -p -m 1777 -- "/tmp/autopkgtest-lxc.q81vxtos/downtmp/command1-artifacts"; export AUTOPKGTEST_ARTIFACTS="/tmp/autopkgtest-lxc.q81vxtos/downtmp/command1-artifacts"; export ADT_ARTIFACTS="$AUTOPKGTEST_ARTIFACTS"; mkdir -p -m 755 "/tmp/autopkgtest-lxc.q81vxtos/downtmp/autopkgtest_tmp"; export AUTOPKGTEST_TMP="/tmp/autopkgtest-lxc.q81vxtos/downtmp/autopkgtest_tmp"; export ADTTMP="$AUTOPKGTEST_TMP"; export DEBIAN_FRONTEND=noninteractive; export LANG=C.UTF-8; export DEB_BUILD_OPTIONS=parallel=4; unset LANGUAGE LC_CTYPE LC_NUMERIC LC_TIME LC_COLLATE LC_MONETARY LC_MESSAGES LC_PAPER LC_NAME LC_ADDRESS LC_TELEPHONE LC_MEASUREMENT LC_IDENTIFICATION LC_ALL;rm -f /tmp/autopkgtest_script_pid; set -C; echo $$ > /tmp/autopkgtest_script_pid; set +C; trap "rm -f /tmp/autopkgtest_script_pid" EXIT INT QUIT PIPE; cd "$buildtree"; touch /tmp/autopkgtest-lxc.q81vxtos/downtmp/command1-stdout /tmp/autopkgtest-lxc.q81vxtos/downtmp/command1-stderr; bash -ec 'sh debian/tests/call-pymol-scripts examples/ \ "(start_pymol)|(xmlrpc01)|(sd_annotate)|(povray01)|(contact)|(dali)|(density)|(groel_es)|(packing)|(packsurf)|(ref_frame)|(ribosome)|(ss_xfer)|(multiclip_ray)|(tkwindow)"' 2> >(tee -a /tmp/autopkgtest-lxc.q81vxtos/downtmp/command1-stderr >&2) > >(tee -a /tmp/autopkgtest-lxc.q81vxtos/downtmp/command1-stdout);" (kind: test) autopkgtest [04:22:04]: test command1: -----------------------]
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