Source: blasr
Version: 5.3.3+dfsg-5
Tags: patch
User: debian-cr...@lists.debian.org
Usertags: cross-satisfiability ftcbfs
blasr fails to cross build from source. The immediate issue is failing
to install python3 for the host architecture. Indeed, blasr does not
need a host architecture python, it merely wants a runnable (i.e. build
architecture) python for ./tools/git-clang-format. That can be requested
using python3:any or python3:native. Beyond this, it fails to pass a
suitable crossfile to meson. The easiest way of doing so is using
dh_auto_configure. Please consider applying the attached patch to make
blasr cross buildable.
Helmut
diff --minimal -Nru blasr-5.3.3+dfsg/debian/changelog
blasr-5.3.3+dfsg/debian/changelog
--- blasr-5.3.3+dfsg/debian/changelog 2020-11-16 13:51:01.000000000 +0100
+++ blasr-5.3.3+dfsg/debian/changelog 2021-02-27 15:03:05.000000000 +0100
@@ -1,3 +1,12 @@
+blasr (5.3.3+dfsg-5.1) UNRELEASED; urgency=medium
+
+ * Non-maintainer upload.
+ * Fix FTCBFS: (Closes: #-1)
+ + Annotate python3 dependency with :any.
+ + Let dh_auto_configure pass a crossfile to meson.
+
+ -- Helmut Grohne <hel...@subdivi.de> Sat, 27 Feb 2021 15:03:05 +0100
+
blasr (5.3.3+dfsg-5) unstable; urgency=medium
* debhelper-compat 13 (routine-update)
diff --minimal -Nru blasr-5.3.3+dfsg/debian/control
blasr-5.3.3+dfsg/debian/control
--- blasr-5.3.3+dfsg/debian/control 2020-11-16 13:51:01.000000000 +0100
+++ blasr-5.3.3+dfsg/debian/control 2021-02-27 15:02:52.000000000 +0100
@@ -4,7 +4,7 @@
Section: science
Priority: optional
Build-Depends: debhelper-compat (= 13),
- python3,
+ python3:any,
meson,
cmake,
pkg-config,
diff --minimal -Nru blasr-5.3.3+dfsg/debian/rules blasr-5.3.3+dfsg/debian/rules
--- blasr-5.3.3+dfsg/debian/rules 2020-11-16 13:51:01.000000000 +0100
+++ blasr-5.3.3+dfsg/debian/rules 2021-02-27 15:03:05.000000000 +0100
@@ -33,7 +33,7 @@
dh $@ --buildsystem=meson
override_dh_auto_configure:
- LDFLAGS="-L$(HTSLIB_LIB) -L$(HDF5_LIB) -lhdf5_cpp -lhdf5"
CPPFLAGS="-isystem $(HDF5_INC)" meson -Dtests=false -Dprefix=/usr build .
+ LDFLAGS="-L$(HTSLIB_LIB) -L$(HDF5_LIB) -lhdf5_cpp -lhdf5"
CPPFLAGS="-isystem $(HDF5_INC)" dh_auto_configure -- -Dtests=false
bax2bam: utils/bax2bax/bin/bax2bam
utils/bax2bax/bin/bax2bam:
@@ -47,7 +47,3 @@
override_dh_auto_test:
echo Tests require data not available in the source distribution
endif
-
-override_dh_auto_build:
- ln -s build obj-$(DEB_BUILD_GNU_TYPE)
- dh_auto_build
