Hi Andreas,
Le 07/02/2021 à 12:42, Andreas Tille a écrit :
Control: tags -1 help
Hi Pierre,
do you have some idea how to fix this?
Good news:
Yes, I forgot to add libcdkr-java as a runtime dependency last time I
looked at this package: adding
libcdkr-java
to the Depends field of the binary package in d/control solves the issue!
Bad news:
30 tests are passing but 1 is failing:
---------------------------------------------------------------------
Executing test function test.desc.cats ... [1] "protein"
"hybrid" "constitutional" "topological"
[5] "electronic" "geometrical"
Timing stopped at: 0.088 0.004 0.037
Error in checkEquals(5, length(cats)) : Mean relative difference: 0.2
---------------------------------------------------------------------
It does not seem to be that important, maybe you can omit it. Then the
autopkgtest should run fine.
Kind regards
All the best,
Pierre
----- Forwarded message from Adrian Bunk <b...@debian.org> -----
Date: Sat, 06 Feb 2021 17:55:20 +0200
From: Adrian Bunk <b...@debian.org>
To: Debian Bug Tracking System <sub...@bugs.debian.org>
Subject: Bug#982111: r-cran-rcdk: autopkgtest failure
X-Debian-PR-Message: report 982111
X-Debian-PR-Package: src:r-cran-rcdk
X-Debian-PR-Keywords:
X-Debian-PR-Source: r-cran-rcdk
Source: r-cran-rcdk
Version: 3.5.0+dfsg-2
Severity: serious
https://ci.debian.net/data/autopkgtest/testing/amd64/r/r-cran-rcdk/10267024/log.gz
...
autopkgtest [17:35:11]: test pkg-r-autopkgtest:
/usr/share/dh-r/pkg-r-autopkgtest
autopkgtest [17:35:11]: test pkg-r-autopkgtest: [-----------------------
Test: Try to load the R library rcdk
R version 4.0.3 (2020-10-10) -- "Bunny-Wunnies Freak Out"
Copyright (C) 2020 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
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library('rcdk')
Loading required package: rcdklibs
Loading required package: rJava
Error: package or namespace load failed for ‘rcdk’:
.onLoad failed in loadNamespace() for 'rcdk', details:
call: .jnew("org/openscience/cdk/formula/rules/NitrogenRule")
error: java.lang.ClassNotFoundException
Execution halted
autopkgtest [17:35:14]: test pkg-r-autopkgtest: -----------------------]
autopkgtest [17:35:14]: test pkg-r-autopkgtest: - - - - - - - - - - results -
- - - - - - - - -
pkg-r-autopkgtest FAIL non-zero exit status 1
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----- End forwarded message -----
