Package: q2-quality-control
Version: 2020.11.1-3
Severity: important
Dear Maintainers,
The current version of q2-quality-control fails its test suite
on ppc64el. To buy us some time I skipped the test on that
architecture using a patch. Here after is the relevant part of
the error, in case the full log[1] gets cleaned up:
=================================== FAILURES
===================================
_
SequenceQualityControlTests.test_exclude_seqs_short_seqs_hit_with_default_vsearch
_
self =
<q2_quality_control.tests.test_quality_control.SequenceQualityControlTests
testMethod=test_exclude_seqs_short_seqs_hit_with_default_vsearch>
def test_exclude_seqs_short_seqs_hit_with_default_vsearch(self):
obs, missed = exclude_seqs(
self.query_seqs_short, self.bacterial_ref, method='vsearch')
> self.assertEqual(sorted(obs.index), sorted(
_dnafastaformats_to_series(self.query_seqs_short).index))
E AssertionError: Lists differ: ['1111783', '1111867', '1111886']
!= ['1111750', '1111768', '1111783', '1111867', '1111886']
E
E First differing element 0:
E '1111783'
E '1111750'
E
E Second list contains 2 additional elements.
E First extra element 3:
E '1111867'
E
E - ['1111783', '1111867', '1111886']
E + ['1111750', '1111768', '1111783', '1111867', '1111886']
E ? ++++++++++++++++++++++
q2_quality_control/tests/test_quality_control.py:215: AssertionError
----------------------------- Captured stdout call
-----------------------------
Running external command line application. This may print messages to
stdout and/or stderr.
The commands to be run are below. These commands cannot be manually
re-run as they will depend on temporary files that no longer exist.
Command: vsearch --usearch_global
/tmp/autopkgtest-lxc.p_pskvmx/downtmp/autopkgtest_tmp/q2_quality_control/tests/data/query-sequences-short.fasta
--id 0.97 --strand both --maxaccepts 1 --maxrejects 0 --db
/tmp/autopkgtest-lxc.p_pskvmx/downtmp/autopkgtest_tmp/q2_quality_control/tests/data/bacterial-ref-sequences.fasta
--threads 1 --userfields query+target+ql+qlo+qhi --userout /tmp/tmpbvtklulf
----------------------------- Captured stderr call
-----------------------------
vsearch v2.15.1_linux_ppc64le, 8.0GB RAM, 4 cores
https://github.com/torognes/vsearch
Reading file
/tmp/autopkgtest-lxc.p_pskvmx/downtmp/autopkgtest_tmp/q2_quality_control/tests/data/bacterial-ref-sequences.fasta
100%
5000 nt in 20 seqs, min 250, max 250, avg 250
Masking 100%
Counting k-mers 100%
Creating k-mer index 100%
Searching 100%
Matching unique query sequences: 3 of 5 (60.00%)
[1]
https://ci.debian.net/data/autopkgtest/testing/ppc64el/q/q2-quality-control/10258640/log.gz
Kind Regards,
--
Étienne Mollier <etienne.moll...@mailoo.org>
Fingerprint: 8f91 b227 c7d6 f2b1 948c 8236 793c f67e 8f0d 11da
Sent from /dev/pts/5, please excuse my verbosity.
