Source: r-cran-seurat Version: 3.1.5-1 Severity: serious Tags: sid bullseye X-Debbugs-CC: debian...@lists.debian.org User: debian...@lists.debian.org Usertags: regression
Hi Maintainer Since 2020-09-25, r-cran-seurat's autopkgtests have been failing in testing [1], due to r-cran-hdf5r and r-bioc-monocle not being available there. However, r-cran-seurat's tests currently also fail in unstable on armhf [2], where r-cran-hdf5r and r-bioc-monocle are both available. I've copied what I hope is the relevant part of the log below. Regards Graham [1] https://ci.debian.net/packages/r/r-cran-seurat/testing/amd64/ [2] https://ci.debian.net/packages/r/r-cran-seurat/unstable/armhf/ > test_check("Seurat") Registered S3 method overwritten by 'cli': method from print.boxx spatstat ── 1. Error: (unknown) (@test_load_10X.R#34) ────────────────────────────────── HDF5-API ../../../src/H5T.c in H5Tget_class(): line 1876: not a datatype class: HDF5 major: Invalid arguments to routine minor: Inappropriate type Backtrace: 1. Seurat::Load10X_Spatial(data.dir = "../testdata/visium") 2. Seurat::Read10X_h5(...) 4. hdf5r:::`[.H5D`(...) 5. x$read(...) 6. self$read_low_level(...) ══ testthat results ═══════════════════════════════════════════════════════════ [ OK: 429 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ] 1. Error: (unknown) (@test_load_10X.R#34) Error: testthat unit tests failed Execution halted
