Package: wnpp Severity: wishlist Subject: ITP: pbmm2 -- minimap2 SMRT wrapper for PacBio data Package: wnpp Owner: Steffen Moeller <moel...@debian.org> Severity: wishlist
* Package name : pbmm2 Version : 1.3.0 Upstream Author : , Pacific Biosciences of California, Inc. * URL : https://github.com/PacificBiosciences/pbmm2 * License : custom Programming Lang: C Description : minimap2 SMRT wrapper for PacBio data pbmm2 is a SMRT C++ wrapper for minimap2's C API. Its purpose is to support native PacBio in- and output, provide sets of recommended parameters, generate sorted output on-the-fly, and postprocess alignments. Sorted output can be used directly for polishing using GenomicConsensus, if BAM has been used as input to pbmm2. Benchmarks show that pbmm2 outperforms BLASR in sequence identity, number of mapped bases, and especially runtime. pbmm2 is the official replacement for BLASR Remark: This package is maintained by Debian Med Packaging Team at https://salsa.debian.org/med-team/pbmm2
