Source: sra-sdk Version: 2.10.6+dfsg-4 Severity: serious The autopkgtests of sra-sdk currently fail in unstable: | >>>>>Running fastq-load... | 2020-05-22T21:52:08 fastq-load.2.10.6 warn: file="SRR6650398_1.fastq" offset="0" | 2020-05-22T21:52:08 fastq-load.2.10.6 warn: quality_scoring_system attribute not set for this file, using Phred as default | 2020-05-22T21:52:08 fastq-load.2.10.6 err: libs/vdb/wtable.c:204:VTableOpenUpdate: schema not found while creating manager within virtual database module - failed to create table with schema NCBI:SRA:Illumina:tbl:phred:v2 | 2020-05-22T21:52:08 fastq-load.2.10.6 err: libs/kproc/queue.c:365:KQueuePop: schema not found while creating manager within virtual database module - accession="SRR6650398" status="failure" | 2020-05-22T21:52:08 fastq-load.2.10.6 err: libs/kproc/queue.c:365:KQueuePop: schema not found while creating manager within virtual database module - load failed: libs/kproc/queue.c:365:KQueuePop: schema not found | autopkgtest [21:52:08]: test run-unit-test: -----------------------] | autopkgtest [21:52:08]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - | run-unit-test FAIL non-zero exit status 3 | autopkgtest [21:52:08]: @@@@@@@@@@@@@@@@@@@@ summary | run-unit-test FAIL non-zero exit status 3
See also https://ci.debian.net/data/autopkgtest/unstable/amd64/s/sra-sdk/5608930/log.gz Cheers -- Sebastian Ramacher
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