Source: r-cran-xml Version: 3.98-1.20-2 Severity: important Tags: ftbfs User: [email protected] Usertags: xml2-config
Dear maintainer,
your package is using `xml2-config` to detect and use libxml2. I'm
removing that script, so please update your build system to use
pkg-config instead.
The libxml2 package in experimental already doesn't ship the xml2-config
script.
Attached is the full build log, hopefully relevant excerpt follows:
** using staged installation
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -E
checking for sed... /bin/sed
checking for pkg-config... /usr/bin/pkg-config
checking for xml2-config... no
Cannot find xml2-config
ERROR: configuration failed for package 'XML'
* removing
'/build/r-cran-xml-3.98-1.20/debian/r-cran-xml/usr/lib/R/site-library/XML'
dh_auto_install: R CMD INSTALL -l
/build/r-cran-xml-3.98-1.20/debian/r-cran-xml/usr/lib/R/site-library --clean .
"--built-timestamp='Sat, 17 Aug 2019 17:34:53 -0500'" returned exit code 1
make: *** [debian/rules:8: binary] Error 255
dpkg-buildpackage: error: fakeroot debian/rules binary subprocess returned exit
status 2
--
regards,
Mattia Rizzolo
GPG Key: 66AE 2B4A FCCF 3F52 DA18 4D18 4B04 3FCD B944 4540 .''`.
More about me: https://mapreri.org : :' :
Launchpad user: https://launchpad.net/~mapreri `. `'`
Debian QA page: https://qa.debian.org/developer.php?login=mattia `-
[0mI: Using pkgname logfile[0m [0mI: Current time: Tue Jan 21 05:08:19 UTC 2020[0m [0mI: pbuilder-time-stamp: 1579583299[0m [0mI: Obtaining the cached apt archive contents[0m [0mI: Copying source file[0m [0mI: copying [pkgs/r-cran-xml_3.98-1.20-2.dsc][0m [0mI: copying [pkgs/r-cran-xml_3.98-1.20.orig.tar.gz][0m [0mI: copying [pkgs/r-cran-xml_3.98-1.20-2.debian.tar.xz][0m [0mI: Extracting source[0m gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/home/mattia/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Sat Aug 17 22:36:19 2019 UTC gpgv: using RSA key A1489FE2AB99A21A gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./r-cran-xml_3.98-1.20-2.dsc dpkg-source: info: extracting r-cran-xml in r-cran-xml-3.98-1.20 dpkg-source: info: unpacking r-cran-xml_3.98-1.20.orig.tar.gz dpkg-source: info: unpacking r-cran-xml_3.98-1.20-2.debian.tar.xz [0mI: using fakeroot in build.[0m [0mI: Installing the build-deps[0m [0mI: -> Attempting to satisfy build-dependencies[0m Note, using file '/build/r-cran-xml_3.98-1.20-2.dsc' to get the build dependencies Reading package lists... Building dependency tree... Reading state information... 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Unpacking libpcre2-16-0:amd64 (10.34-7) ... Selecting previously unselected package libpcre2-32-0:amd64. Preparing to unpack .../110-libpcre2-32-0_10.34-7_amd64.deb ... Unpacking libpcre2-32-0:amd64 (10.34-7) ... Selecting previously unselected package libpcre2-posix2:amd64. Preparing to unpack .../111-libpcre2-posix2_10.34-7_amd64.deb ... Unpacking libpcre2-posix2:amd64 (10.34-7) ... Selecting previously unselected package libpcre2-dev:amd64. Preparing to unpack .../112-libpcre2-dev_10.34-7_amd64.deb ... Unpacking libpcre2-dev:amd64 (10.34-7) ... Selecting previously unselected package libpcre16-3:amd64. Preparing to unpack .../113-libpcre16-3_2%3a8.39-12+b1_amd64.deb ... Unpacking libpcre16-3:amd64 (2:8.39-12+b1) ... Selecting previously unselected package libpcre32-3:amd64. Preparing to unpack .../114-libpcre32-3_2%3a8.39-12+b1_amd64.deb ... Unpacking libpcre32-3:amd64 (2:8.39-12+b1) ... Selecting previously unselected package libpcrecpp0v5:amd64. 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Selecting previously unselected package libxmuu1:amd64. Preparing to unpack .../121-libxmuu1_2%3a1.1.2-2+b3_amd64.deb ... Unpacking libxmuu1:amd64 (2:1.1.2-2+b3) ... Selecting previously unselected package xauth. Preparing to unpack .../122-xauth_1%3a1.0.10-1_amd64.deb ... Unpacking xauth (1:1.0.10-1) ... Selecting previously unselected package pkg-config. Preparing to unpack .../123-pkg-config_0.29-6_amd64.deb ... Unpacking pkg-config (0.29-6) ... Selecting previously unselected package r-base-dev. Preparing to unpack .../124-r-base-dev_3.6.2-2_all.deb ... Unpacking r-base-dev (3.6.2-2) ... Selecting previously unselected package libfile-which-perl. Preparing to unpack .../125-libfile-which-perl_1.23-1_all.deb ... Unpacking libfile-which-perl (1.23-1) ... Selecting previously unselected package libswitch-perl. Preparing to unpack .../126-libswitch-perl_2.17-2_all.deb ... Unpacking libswitch-perl (2.17-2) ... Selecting previously unselected package dh-r. Preparing to unpack .../127-dh-r_20200104_all.deb ... Unpacking dh-r (20200104) ... Setting up libpcrecpp0v5:amd64 (2:8.39-12+b1) ... Setting up libpipeline1:amd64 (1.5.2-2) ... Setting up libgraphite2-3:amd64 (1.3.13-11) ... Setting up libpixman-1-0:amd64 (0.36.0-1) ... Setting up libfile-which-perl (1.23-1) ... Setting up libxau6:amd64 (1:1.0.8-1+b2) ... Setting up libkeyutils1:amd64 (1.6-6) ... Setting up libpsl5:amd64 (0.20.2-2) ... Setting up libpcre16-3:amd64 (2:8.39-12+b1) ... Setting up libdatrie1:amd64 (0.2.12-3) ... Setting up libmagic-mgc (1:5.38-4) ... Setting up libarchive-zip-perl (1.67-1) ... Setting up libglib2.0-0:amd64 (2.62.4-1) ... No schema files found: doing nothing. Setting up unzip (6.0-25) ... Setting up libdebhelper-perl (12.7.3) ... Setting up libbrotli1:amd64 (1.0.7-6) ... Setting up x11-common (1:7.7+20) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libnghttp2-14:amd64 (1.40.0-1) ... Setting up libmagic1:amd64 (1:5.38-4) ... Setting up gettext-base (0.19.8.1-10) ... Setting up file (1:5.38-4) ... Setting up libldap-common (2.4.48+dfsg-1) ... Setting up libjbig0:amd64 (2.1-3.1+b2) ... Setting up libpcre2-16-0:amd64 (10.34-7) ... Setting up libkrb5support0:amd64 (1.17-6) ... Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg-2) ... Setting up zip (3.0-11+b1) ... Setting up autotools-dev (20180224.1) ... Setting up libpcre2-32-0:amd64 (10.34-7) ... Setting up libblas3:amd64 (3.9.0-1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libjpeg62-turbo:amd64 (1:1.5.2-2+b1) ... Setting up libswitch-perl (2.17-2) ... Setting up libx11-data (2:1.6.8-1) ... Setting up libjpeg62-turbo-dev:amd64 (1:1.5.2-2+b1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b1) ... Setting up libncurses6:amd64 (6.1+20191019-1) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up libfribidi0:amd64 (1.0.8-2) ... Setting up libpng16-16:amd64 (1.6.37-1) ... Setting up libpcre32-3:amd64 (2:8.39-12+b1) ... Setting up libtcl8.6:amd64 (8.6.10+dfsg-1) ... Setting up autopoint (0.19.8.1-10) ... Setting up libwebp6:amd64 (0.6.1-2+b1) ... Setting up libcroco3:amd64 (0.6.13-1) ... Setting up pkg-config (0.29-6) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up libpcre2-posix2:amd64 (10.34-7) ... Setting up libk5crypto3:amd64 (1.17-6) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-2) ... Setting up libgfortran5:amd64 (9.2.1-23) ... Setting up liblzma-dev:amd64 (5.2.4-1+b1) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-1+b1) ... Setting up sensible-utils (0.0.12+nmu1) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libsub-override-perl (0.09-2) ... Setting up libthai-data (0.1.28-3) ... Setting up libssh2-1:amd64 (1.8.0-2.1) ... Setting up libkrb5-3:amd64 (1.17-6) ... Setting up libtiff5:amd64 (4.1.0+git191117-2) ... Setting up openssl (1.1.1d-2) ... Setting up libbsd0:amd64 (0.10.0-1) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up xdg-utils (1.1.3-1) ... Setting up libblas-dev:amd64 (3.9.0-1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode Setting up dctrl-tools (2.24-3+b1) ... Setting up libbz2-dev:amd64 (1.0.8-2) ... Setting up libfile-stripnondeterminism-perl (1.6.3-1) ... Setting up libice6:amd64 (2:1.0.9-2) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up liblapack3:amd64 (3.9.0-1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libncurses-dev:amd64 (6.1+20191019-1) ... Setting up libxcb1:amd64 (1.13.1-3) ... Setting up gettext (0.19.8.1-10) ... Setting up libpcre2-dev:amd64 (10.34-7) ... Setting up libtool (2.4.6-11) ... Setting up libxcb-render0:amd64 (1.13.1-3) ... Setting up libpcre3-dev:amd64 (2:8.39-12+b1) ... Setting up libpng-dev:amd64 (1.6.37-1) ... Setting up libjpeg-dev (1:1.5.2-2) ... Setting up libgfortran-9-dev:amd64 (9.2.1-23) ... Setting up libldap-2.4-2:amd64 (2.4.48+dfsg-1+b2) ... Setting up m4 (1.4.18-4) ... Setting up libxcb-shm0:amd64 (1.13.1-3) ... Setting up libreadline-dev:amd64 (8.0-3) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libthai0:amd64 (0.1.28-3) ... Setting up ca-certificates (20190110) ... Updating certificates in /etc/ssl/certs... 128 added, 0 removed; done. Setting up libfreetype6:amd64 (2.10.1-2) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up liblapack-dev:amd64 (3.9.0-1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode Setting up libgssapi-krb5-2:amd64 (1.17-6) ... Setting up ucf (3.0038+nmu1) ... Setting up autoconf (2.69-11) ... Setting up dh-strip-nondeterminism (1.6.3-1) ... Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-4) ... Setting up libncurses5-dev:amd64 (6.1+20191019-1) ... Setting up libcurl4:amd64 (7.67.0-2) ... Setting up libx11-6:amd64 (2:1.6.8-1) ... Setting up libharfbuzz0b:amd64 (2.6.4-1) ... Setting up libsm6:amd64 (2:1.2.3-1) ... Setting up libxmuu1:amd64 (2:1.1.2-2+b3) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libpaper1:amd64 (1.1.28+b1) ... Creating config file /etc/papersize with new version Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up gfortran-9 (9.2.1-23) ... Setting up fontconfig-config (2.13.1-2) ... Setting up po-debconf (1.0.21) ... Setting up libxext6:amd64 (2:1.3.3-1+b2) ... Setting up libpaper-utils (1.1.28+b1) ... Setting up man-db (2.9.0-2) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran (4:9.2.1-3.1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libxt6:amd64 (1:1.1.5-1+b3) ... Setting up xauth (1:1.0.10-1) ... Setting up libxss1:amd64 (1:1.2.3-1) ... Setting up libfontconfig1:amd64 (2.13.1-2+b1) ... Setting up fontconfig (2.13.1-2+b1) ... Regenerating fonts cache... done. Setting up libxft2:amd64 (2.3.2-2) ... Setting up libtk8.6:amd64 (8.6.10-1) ... Setting up libpango-1.0-0:amd64 (1.42.4-8) ... Setting up libcairo2:amd64 (1.16.0-4) ... Setting up libpangoft2-1.0-0:amd64 (1.42.4-8) ... Setting up libpangocairo-1.0-0:amd64 (1.42.4-8) ... Setting up r-base-core (3.6.2-2) ... Creating config file /etc/R/Renviron with new version Setting up r-base-dev (3.6.2-2) ... Setting up dh-autoreconf (19) ... Setting up debhelper (12.7.3) ... Setting up dh-r (20200104) ... Processing triggers for mime-support (3.64) ... Processing triggers for libc-bin (2.29-9) ... Processing triggers for ca-certificates (20190110) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: libfakeroot The following NEW packages will be installed: fakeroot libfakeroot debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/132 kB of archives. After this operation, 393 kB of additional disk space will be used. Selecting previously unselected package libfakeroot:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19374 files and directories currently installed.) Preparing to unpack .../libfakeroot_1.24-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.24-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../fakeroot_1.24-1_amd64.deb ... Unpacking fakeroot (1.24-1) ... Setting up libfakeroot:amd64 (1.24-1) ... Setting up fakeroot (1.24-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Processing triggers for man-db (2.9.0-2) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for libc-bin (2.29-9) ... [0mI: Copying back the cached apt archive contents[0m [0mI: Building the package[0m [0mI: Running cd /build/r-cran-xml-3.98-1.20/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin" HOME="/nonexistent" dpkg-buildpackage -us -uc [0m dpkg-buildpackage: info: source package r-cran-xml dpkg-buildpackage: info: source version 3.98-1.20-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Dirk Eddelbuettel <[email protected]> dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_clean -O--buildsystem=R dpkg-source -b . dpkg-source: info: using source format '3.0 (quilt)' dpkg-source: info: building r-cran-xml using existing ./r-cran-xml_3.98-1.20.orig.tar.gz dpkg-source: warning: ignoring deletion of file TAGS, use --include-removal to override dpkg-source: info: building r-cran-xml in r-cran-xml_3.98-1.20-2.debian.tar.xz dpkg-source: info: building r-cran-xml in r-cran-xml_3.98-1.20-2.dsc debian/rules build dh build --buildsystem R dh_update_autotools_config -O--buildsystem=R dh_auto_configure -O--buildsystem=R dh_auto_build -O--buildsystem=R dh_auto_test -O--buildsystem=R fakeroot debian/rules binary dh binary --buildsystem R dh_testroot -O--buildsystem=R dh_prep -O--buildsystem=R dh_auto_install -O--buildsystem=R I: R Package: XML Version: 3.98-1.20 I: Building using R version 3.6.2-2 I: R API version: r-api-3.5 I: Using built-time from d/changelog: Sat, 17 Aug 2019 17:34:53 -0500 mkdir -p /build/r-cran-xml-3.98-1.20/debian/r-cran-xml/usr/lib/R/site-library R CMD INSTALL -l /build/r-cran-xml-3.98-1.20/debian/r-cran-xml/usr/lib/R/site-library --clean . "--built-timestamp='Sat, 17 Aug 2019 17:34:53 -0500'" * installing *source* package 'XML' ... file 'TAGS' is missing ** using staged installation checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking for sed... /bin/sed checking for pkg-config... /usr/bin/pkg-config checking for xml2-config... no Cannot find xml2-config ERROR: configuration failed for package 'XML' * removing '/build/r-cran-xml-3.98-1.20/debian/r-cran-xml/usr/lib/R/site-library/XML' dh_auto_install: R CMD INSTALL -l /build/r-cran-xml-3.98-1.20/debian/r-cran-xml/usr/lib/R/site-library --clean . "--built-timestamp='Sat, 17 Aug 2019 17:34:53 -0500'" returned exit code 1 make: *** [debian/rules:8: binary] Error 255 dpkg-buildpackage: error: fakeroot debian/rules binary subprocess returned exit status 2 [0mI: copying local configuration[0m [0;31mE: Failed autobuilding of package[0m [0mI: unmounting /home/mattia/pbuilder/repository/ filesystem[0m [0mI: unmounting dev/ptmx filesystem[0m [0mI: unmounting dev/pts filesystem[0m [0mI: unmounting dev/shm filesystem[0m [0mI: unmounting proc filesystem[0m [0mI: unmounting sys filesystem[0m [0mI: cleaning the build env [0m [0mI: removing directory /var/cache/pbuilder/build/9683 and its subdirectories[0m
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