On 9/12/19 10:11 AM, Andreas Tille wrote: > On Mon, Sep 09, 2019 at 09:59:09PM +0200, Paul Gevers wrote: >> ************ Run simple_test.sh **************** >> Traceback (most recent call last): >> File "compare_fasta.py", line 21, in <module> >> s2 = read_seqs(fasta2) >> File "compare_fasta.py", line 15, in read_seqs >> for line in open(fasta): >> IOError: [Errno 2] No such file or directory: 'X.contigs.fa' > The actual problem is: > > $ /usr/bin/minia > /usr/bin/minia: symbol lookup error: /usr/bin/minia: undefined symbol: > _ZN4gatb4core8debruijn4impl9link_tigsILm128EEEvNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEiiRmb > > I suspect minia needs a different / newer version of libgatbcore2. > > @Olivier: You once said you have contact to gatb-core upstream and their > downstream projects. Would you be able to teach them about a sensible > release strategy with some API the depending projects could rely on? As > far as I can see the depending projects rely on Git submodules with a > specific commit which is not really helpful. unfortunatly, there is nobody left in my lab related to this software... :-( > > Kind regards > > Andreas. > -- Olivier Sallou Univ Rennes, Inria, CNRS, IRISA Irisa, Campus de Beaulieu F-35042 RENNES - FRANCE Tel: 02.99.84.71.95
gpg key id: 4096R/326D8438 (keyring.debian.org) Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438
