On Tue, 9 Jul 2019 at 10:33, Andreas Tille <andr...@fam-tille.de> wrote: > > Hi Carnė, > > I have not checked but I could imagine that this issue is somehow > connected to the the new upstream version of bioperl. Since you > intended to to restructure the bioperl packages I think this is a good > point in time. Since you are way more involved in bioperl than I I'd be > more than happy if you do this fully according to your own opinion. > Please let me know if you need any help. > [...] > This is also observed by reproducible builds using pbuilder: > > https://tests.reproducible-builds.org/debian/rbuild/unstable/amd64/gbrowse_2.56+dfsg-4.rbuild.log.gz
I have checked the output from that link and it's getting a lot of "Can't locate Bio/DB/SeqFeature/Store.pm in @INC (you may need to install the Bio::DB::SeqFeature::Store module)" and another for Bio::DB::GFF. These module used to be part of the BioPerl distribution but has been moved out to their own distribution, both of which have already been released. Their distributions are: Bio-DB-SeqFeature [1,2] Bio-DB-GFF [3,4] [1] https://github.com/bioperl/Bio-DB-SeqFeature/ [2] https://metacpan.org/release/Bio-DB-SeqFeature [3] https://github.com/bioperl/Bio-DB-GFF/ [4] https://metacpan.org/release/Bio-DB-GFF
