Package: wnpp Severity: wishlist Subject: ITP: ragout -- Reference-Assisted Genome Ordering UTility Package: wnpp Owner: Andreas Tille <ti...@debian.org> Severity: wishlist
* Package name : ragout Version : 2.1.1 Upstream Author : Mikhail Kolmogorov and Joel Armstrong and * URL : https://github.com/fenderglass/Ragout/ * License : BSD-3-clause Programming Lang: C Description : Reference-Assisted Genome Ordering UTility Ragout (Reference-Assisted Genome Ordering UTility) is a tool for chromosome-level scaffolding using multiple references. Given initial assembly fragments (contigs/scaffolds) and one or multiple related references (complete or draft), it produces a chromosome-scale assembly (as a set of scaffolds). . The approach is based on the analysis of genome rearrangements (like inversions or chromosomal translocations) between the input genomes and reconstructing the most parsimonious structure of the target genome. . Ragout now supports both small and large genomes (of mammalian scale and complexity). The assembly of highly polymorphic genomes is currently limited. Remark: This package is maintained by Debian Med Packaging Team at https://salsa.debian.org/med-team/ragout
