Hi Carnë,
On Wed, Feb 06, 2019 at 01:18:26PM +0000, Carnë Draug wrote:
> This is by design and is mentioned on the release Changes file:
>
> * The following modules are new in the BioPerl distribution. They
> have been previously released in the BioPerl-Run distribution.
> This will enable smaller distributions that provide a
> Bio::Tool::Run interface, to be only dependent on the BioPerl
> distribution instead of the whole (very large) BioPerl-Run:
>
> Bio::Tools::Run::Analysis
> Bio::Tools::Run::AnalysisFactory
> Bio::Tools::Run::Phylo::PhyloBase
> Bio::Tools::Run::WrapperBase
> Bio::Tools::Run::WrapperBase::CommandExts
Thanks for the clarification.
> I guess the fix for this is to have in bioperl's d/control:
>
> Breaks: libbio-perl-run-perl (<< 1.7.3)
>
> It would be nice if upstream did a new release of bioperl-run soon
> without those modules. I have prepared the upstream repository and
> have requested them to make a release but I don't know when it will
> happen.
>
> Alternatively, you could remove those files in Debian and have a
> bioperl-run version 1.7.2-4.
This is what I've though about: Removing the files from bioperl-run
(which would be 1.7.2-5 then)
Kind regards
Andreas.
--
http://fam-tille.de
