Source: htsjdk
Version: 2.16.1+dfsg-1
Severity: serious
Tags: ftbfs
https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/htsjdk.html
...
Compiling with JDK Java compiler API.
/build/1st/htsjdk-2.16.1+dfsg/src/main/java/htsjdk/samtools/SAMSequenceDictionary.java:34:
error: package javax.xml.bind.annotation does not exist
import javax.xml.bind.annotation.XmlElement;
^
/build/1st/htsjdk-2.16.1+dfsg/src/main/java/htsjdk/samtools/SAMSequenceDictionary.java:35:
error: package javax.xml.bind.annotation does not exist
import javax.xml.bind.annotation.XmlRootElement;
^
/build/1st/htsjdk-2.16.1+dfsg/src/main/java/htsjdk/samtools/SAMSequenceDictionary.java:36:
error: package javax.xml.bind.annotation does not exist
import javax.xml.bind.annotation.XmlTransient;
^
/build/1st/htsjdk-2.16.1+dfsg/src/main/java/htsjdk/samtools/SAMSequenceRecord.java:26:
error: package javax.xml.bind.annotation does not exist
import javax.xml.bind.annotation.XmlAttribute;
^
/build/1st/htsjdk-2.16.1+dfsg/src/main/java/htsjdk/samtools/SAMSequenceRecord.java:27:
error: package javax.xml.bind.annotation does not exist
import javax.xml.bind.annotation.XmlRootElement;
^
/build/1st/htsjdk-2.16.1+dfsg/src/main/java/htsjdk/samtools/SAMSequenceRecord.java:28:
error: package javax.xml.bind.annotation does not exist
import javax.xml.bind.annotation.XmlValue;
^
/build/1st/htsjdk-2.16.1+dfsg/src/main/java/htsjdk/samtools/AbstractSAMHeaderRecord.java:26:
error: package javax.xml.bind.annotation does not exist
import javax.xml.bind.annotation.XmlTransient;
^
/build/1st/htsjdk-2.16.1+dfsg/src/main/java/htsjdk/samtools/AbstractSAMHeaderRecord.java:36:
error: cannot find symbol
@XmlTransient /* don't consider this class for XML-serialization */
^
symbol: class XmlTransient
/build/1st/htsjdk-2.16.1+dfsg/src/main/java/htsjdk/samtools/SAMSequenceRecord.java:41:
error: cannot find symbol
@XmlRootElement(name="Reference")
^
symbol: class XmlRootElement
/build/1st/htsjdk-2.16.1+dfsg/src/main/java/htsjdk/samtools/SAMSequenceDictionary.java:44:
error: cannot find symbol
@XmlRootElement(name="References")
^
symbol: class XmlRootElement
/build/1st/htsjdk-2.16.1+dfsg/src/main/java/htsjdk/samtools/SAMSequenceDictionary.java:51:
error: cannot find symbol
@XmlElement(name="Reference")
^
symbol: class XmlElement
location: class SAMSequenceDictionary
/build/1st/htsjdk-2.16.1+dfsg/src/main/java/htsjdk/samtools/SAMSequenceDictionary.java:63:
error: cannot find symbol
@XmlTransient //we use the field instead of getter/setter
^
symbol: class XmlTransient
location: class SAMSequenceDictionary
/build/1st/htsjdk-2.16.1+dfsg/src/main/java/htsjdk/samtools/SAMSequenceRecord.java:103:
error: cannot find symbol
@XmlValue
^
symbol: class XmlValue
location: class SAMSequenceRecord
/build/1st/htsjdk-2.16.1+dfsg/src/main/java/htsjdk/samtools/SAMSequenceRecord.java:117:
error: cannot find symbol
@XmlAttribute(name="length")
^
symbol: class XmlAttribute
location: class SAMSequenceRecord
/build/1st/htsjdk-2.16.1+dfsg/src/main/java/htsjdk/samtools/SAMSequenceRecord.java:121:
error: cannot find symbol
@XmlAttribute(name="assembly")
^
symbol: class XmlAttribute
location: class SAMSequenceRecord
/build/1st/htsjdk-2.16.1+dfsg/src/main/java/htsjdk/samtools/SAMSequenceRecord.java:125:
error: cannot find symbol
@XmlAttribute(name="species")
^
symbol: class XmlAttribute
location: class SAMSequenceRecord
/build/1st/htsjdk-2.16.1+dfsg/src/main/java/htsjdk/samtools/SAMSequenceRecord.java:129:
error: cannot find symbol
@XmlAttribute(name="md5")
^
symbol: class XmlAttribute
location: class SAMSequenceRecord
/build/1st/htsjdk-2.16.1+dfsg/src/main/java/htsjdk/samtools/SAMSequenceRecord.java:136:
error: cannot find symbol
@XmlAttribute(name="index")
^
symbol: class XmlAttribute
location: class SAMSequenceRecord
/build/1st/htsjdk-2.16.1+dfsg/src/main/java/htsjdk/samtools/cram/structure/EncodingParams.java:36:
error: package javax.xml.bind does not exist
return id.name() + ":" +
javax.xml.bind.DatatypeConverter.printHexBinary(Arrays.copyOfRange(params, 0,
Math.max(20, params.length)));
^
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
19 errors
