Package: sambamba Version: 0.6.6-1 Severity: serious Tags: buster sid Justification: FTBFS on amd64
Dear Maintainer, sambamba FTBFS on sid. https://buildd.debian.org/status/fetch.php?pkg=sambamba&arch=amd64&ver=0.6.6-1%2Bb1&stamp=1504167027&raw=0 ------ Build targets in project: 2 dh_auto_build -a -O--buildsystem=meson ninja -j4 -v [1/74] ldc2 -Isambamba@exe -I. -I.. -I/usr/include/d/ -I/usr/include/htslib -enable-color -O3 -g -release -of 'sambamba@exe/main.d.o' -c ../main.d ../sambamba/utils/common/readstorage.d(22): Deprecation: module std.c.stdlib is deprecated - Import core.stdc.stdlib or core.sys.posix.stdlib instead ../sambamba/utils/common/readstorage.d(23): Deprecation: module std.c.string is deprecated - Import core.stdc.string instead ../sambamba/sort.d(45): Deprecation: module std.c.stdlib is deprecated - Import core.stdc.stdlib or core.sys.posix.stdlib instead ../sambamba/sort.d(46): Deprecation: module std.c.string is deprecated - Import core.stdc.string instead ../sambamba/markdup.d(37): Deprecation: module std.c.stdlib is deprecated - Import core.stdc.stdlib or core.sys.posix.stdlib instead ../sambamba/depth.d(1154): Deprecation: Implicit string concatenation is deprecated, use "mapping_quality > 0 and " ~ "not duplicate and " instead ../sambamba/depth.d(1155): Deprecation: Implicit string concatenation is deprecated, use "not duplicate and " ~ "not failed_quality_control" instead [2/74] ldc2 -Isambamba@exe -I. -I.. -I/usr/include/d/ -I/usr/include/htslib -enable-color -O3 -g -release -of 'sambamba@exe/sambamba_fixbins.d.o' -c ../sambamba/fixbins.d [3/74] ldc2 -Isambamba@exe -I. -I.. -I/usr/include/d/ -I/usr/include/htslib -enable-color -O3 -g -release -of 'sambamba@exe/sambamba_depth.d.o' -c ../sambamba/depth.d FAILED: sambamba@exe/sambamba_depth.d.o ldc2 -Isambamba@exe -I. -I.. -I/usr/include/d/ -I/usr/include/htslib -enable-color -O3 -g -release -of 'sambamba@exe/sambamba_depth.d.o' -c ../sambamba/depth.d ../sambamba/depth.d(1154): Deprecation: Implicit string concatenation is deprecated, use "mapping_quality > 0 and " ~ "not duplicate and " instead ../sambamba/depth.d(1155): Deprecation: Implicit string concatenation is deprecated, use "not duplicate and " ~ "not failed_quality_control" instead 0 libLLVM-4.0.so.1 0x00007fdf83fb4f45 llvm::sys::PrintStackTrace(llvm::raw_ostream&) + 37 1 libLLVM-4.0.so.1 0x00007fdf83fb31a6 llvm::sys::RunSignalHandlers() + 86 2 libLLVM-4.0.so.1 0x00007fdf83fb32c3 3 libpthread.so.0 0x00007fdf8321b0c0 4 ldc2 0x0000562179492ee2 5 ldc2 0x0000562179518017 6 ldc2 0x00005621795185dc 7 ldc2 0x00005621794dc090 8 ldc2 0x00005621794d5be1 9 ldc2 0x00005621794e1696 10 ldc2 0x00005621794d7041 11 ldc2 0x00005621794c4dfd 12 ldc2 0x00005621794c3bc4 13 ldc2 0x00005621794c1dd4 14 ldc2 0x000056217948be81 15 ldc2 0x0000562179482b00 16 ldc2 0x0000562179482c9b 17 ldc2 0x0000562179483564 18 ldc2 0x000056217949e915 19 ldc2 0x0000562179534dc2 20 ldc2 0x000056217950ded9 21 ldc2 0x00005621793ffa0d 22 ldc2 0x000056217951072a 23 ldc2 0x000056217955b35f 24 ldc2 0x000056217955b324 25 ldc2 0x000056217955b250 26 libc.so.6 0x00007fdf825f32e1 __libc_start_main + 241 27 ldc2 0x00005621792b57ea Segmentation fault [4/74] ldc2 -Isambamba@exe -I. -I.. -I/usr/include/d/ -I/usr/include/htslib -enable-color -O3 -g -release -of 'sambamba@exe/sambamba_index.d.o' -c ../sambamba/index.d [5/74] ldc2 -Isambamba@exe -I. -I.. -I/usr/include/d/ -I/usr/include/htslib -enable-color -O3 -g -release -of 'sambamba@exe/sambamba_flagstat.d.o' -c ../sambamba/flagstat.d [6/74] ldc2 -Isambamba@exe -I. -I.. -I/usr/include/d/ -I/usr/include/htslib -enable-color -O3 -g -release -of 'sambamba@exe/sambamba_markdup.d.o' -c ../sambamba/markdup.d FAILED: sambamba@exe/sambamba_markdup.d.o ldc2 -Isambamba@exe -I. -I.. -I/usr/include/d/ -I/usr/include/htslib -enable-color -O3 -g -release -of 'sambamba@exe/sambamba_markdup.d.o' -c ../sambamba/markdup.d ../sambamba/markdup.d(37): Deprecation: module std.c.stdlib is deprecated - Import core.stdc.stdlib or core.sys.posix.stdlib instead 0 libLLVM-4.0.so.1 0x00007f56575adf45 llvm::sys::PrintStackTrace(llvm::raw_ostream&) + 37 1 libLLVM-4.0.so.1 0x00007f56575ac1a6 llvm::sys::RunSignalHandlers() + 86 2 libLLVM-4.0.so.1 0x00007f56575ac2c3 3 libpthread.so.0 0x00007f56568140c0 4 ldc2 0x000055c9d4f89ee2 5 ldc2 0x000055c9d500f017 6 ldc2 0x000055c9d500f5dc 7 ldc2 0x000055c9d4fd3090 8 ldc2 0x000055c9d4fccbe1 9 ldc2 0x000055c9d4fd8696 10 ldc2 0x000055c9d4fce041 11 ldc2 0x000055c9d4fbbdfd 12 ldc2 0x000055c9d4fbabc4 13 ldc2 0x000055c9d4fb8dd4 14 ldc2 0x000055c9d4f82e81 15 ldc2 0x000055c9d4f79b00 16 ldc2 0x000055c9d4f79c9b 17 ldc2 0x000055c9d4f7a564 18 ldc2 0x000055c9d4f95915 19 ldc2 0x000055c9d502bdc2 20 ldc2 0x000055c9d5004ed9 21 ldc2 0x000055c9d4ef6a0d 22 ldc2 0x000055c9d500772a 23 ldc2 0x000055c9d505235f 24 ldc2 0x000055c9d5052324 25 ldc2 0x000055c9d5052250 26 libc.so.6 0x00007f5655bec2e1 __libc_start_main + 241 27 ldc2 0x000055c9d4dac7ea Segmentation fault ninja: build stopped: subcommand failed. dh_auto_build: ninja -j4 -v returned exit code 1 debian/rules:16: recipe for target 'build-arch' failed make: *** [build-arch] Error 1 dpkg-buildpackage: error: debian/rules build-arch gave error exit status 2 -------------------------------------------------------------------------------- Build finished at 2017-08-31T08:10:18Z ------ Coudl you check about this problem? -- System Information: Debian Release: buster/sid APT prefers unstable APT policy: (500, 'unstable') Architecture: amd64 (x86_64) Kernel: Linux 4.11.0-2-amd64 (SMP w/8 CPU cores) Locale: LANG=ja_JP.UTF-8, LC_CTYPE=ja_JP.UTF-8 (charmap=UTF-8), LANGUAGE=ja_JP.UTF-8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/dash Init: systemd (via /run/systemd/system)
