Package: trimmomatic Version: 0.35+dfsg-1 Severity: normal Tags: patch Dear Maintainer,
There is an error in the wrapper for the java class, which means that properly quoted arguments (like "File name.extension") get expanded, and passed as File name.extension -- System Information: Debian Release: stretch/sid APT prefers xenial-updates APT policy: (500, 'xenial-updates'), (500, 'xenial-security'), (500, 'xenial'), (100, 'xenial-backports') Architecture: amd64 (x86_64) Foreign Architectures: i386 Kernel: Linux 4.4.0-83-generic (SMP w/4 CPU cores) Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/dash Init: systemd (via /run/systemd/system) Versions of packages trimmomatic depends on: ii default-jre 2:1.8-56ubuntu2 ii libjbzip2-java 0.9.1-3 trimmomatic recommends no packages. trimmomatic suggests no packages. -- no debconf information --===============3715461592210098623== Content-Type: text/x-diff; charset="us-ascii" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit Content-Disposition: attachment; filename="spaced_filenames.diff" Index: trimmomatic/debian/bin/TrimmomaticPE =================================================================== --- trimmomatic.orig/debian/bin/TrimmomaticPE +++ trimmomatic/debian/bin/TrimmomaticPE @@ -8,4 +8,4 @@ if [ "" = "$JARVERSION" ] ; then exit 1 fi -java -classpath "$JARVERSION" org.usadellab.$PKGNAME.$FUNCTIONTOCALL $@ +java -classpath "$JARVERSION" org.usadellab.$PKGNAME.$FUNCTIONTOCALL "$@"
