Source: plast Version: 2.3.1+dfsg-4 Severity: serious Tags: stretch sid User: [email protected] Usertags: qa-ftbfs-20170418-i386 qa-ftbfs Justification: FTBFS in stretch on i386
Hi, During a rebuild of all packages in stretch (in a stretch chroot, not a sid chroot), your package failed to build on i386. Relevant part (hopefully): > /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ > -I/<<BUILDDIR>>/plast-2.3.1+dfsg/obj-i686-linux-gnu/include > -I/usr/lib/jvm/java-8-openjdk-i386/include > -I/usr/lib/jvm/java-8-openjdk-i386/include/linux -g -O2 > -fdebug-prefix-map=/<<BUILDDIR>>/plast-2.3.1+dfsg=. -fstack-protector-strong > -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 > -funroll-loops -fomit-frame-pointer -o > CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp.o > -c > /<<BUILDDIR>>/plast-2.3.1+dfsg/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp > /<<BUILDDIR>>/plast-2.3.1+dfsg/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:28:10: > warning: #warning error undefined __SSE3__ or __SSE2__ [-Wcpp] > #warning error undefined __SSE3__ or __SSE2__ > ^~~~~~~ > /<<BUILDDIR>>/plast-2.3.1+dfsg/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp: > In member function 'void > algo::hits::gapped::SmallGapHitIteratorSSE8::computeScores(size_t, const > LETTER*, const LETTER*, int*)': > /<<BUILDDIR>>/plast-2.3.1+dfsg/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:294:5: > error: '__m128i' was not declared in this scope > __m128i vscore_gap_col; > ^~~~~~~ > /<<BUILDDIR>>/plast-2.3.1+dfsg/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:295:13: > error: expected ';' before 'vscore_gap_row' > __m128i vscore_gap_row; > ^~~~~~~~~~~~~~ > /<<BUILDDIR>>/plast-2.3.1+dfsg/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:296:13: > error: expected ';' before 'vnext_score' > __m128i vnext_score; > ^~~~~~~~~~~ > /<<BUILDDIR>>/plast-2.3.1+dfsg/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:297:13: > error: expected ';' before 'vscore' > __m128i vscore; > ^~~~~~ > /<<BUILDDIR>>/plast-2.3.1+dfsg/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:298:13: > error: expected ';' before 'vbest_score' > __m128i vbest_score; > ^~~~~~~~~~~ > /<<BUILDDIR>>/plast-2.3.1+dfsg/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:299:13: > error: expected ';' before 'vbest_gap_arr' > __m128i vbest_gap_arr[neighbourLength]; > ^~~~~~~~~~~~~ > /<<BUILDDIR>>/plast-2.3.1+dfsg/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:300:13: > error: expected ';' before 'vbest_arr' > __m128i vbest_arr[neighbourLength]; > ^~~~~~~~~ > /<<BUILDDIR>>/plast-2.3.1+dfsg/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:301:13: > error: expected ';' before 'vgap_extend' > __m128i vgap_extend; > ^~~~~~~~~~~ > /<<BUILDDIR>>/plast-2.3.1+dfsg/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:302:13: > error: expected ';' before 'vgap_open' > __m128i vgap_open; > ^~~~~~~~~ > /<<BUILDDIR>>/plast-2.3.1+dfsg/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:303:13: > error: expected ';' before 'vgap_open_extend' > __m128i vgap_open_extend; > ^~~~~~~~~~~~~~~~ > /<<BUILDDIR>>/plast-2.3.1+dfsg/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:304:13: > error: expected ';' before 'vscore_min' > __m128i vscore_min; > ^~~~~~~~~~ > /<<BUILDDIR>>/plast-2.3.1+dfsg/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:305:13: > error: expected ';' before 'vtemp' > __m128i vtemp; > ^~~~~ > /<<BUILDDIR>>/plast-2.3.1+dfsg/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:306:13: > error: expected ';' before 'vtemp1' > __m128i vtemp1; > ^~~~~~ > /<<BUILDDIR>>/plast-2.3.1+dfsg/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:309:5: > error: 'vgap_extend' was not declared in this scope > vgap_extend = _mm_set1_epi16 (-_parameters->extendGapCost); > ^~~~~~~~~~~ > /<<BUILDDIR>>/plast-2.3.1+dfsg/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:309:62: > error: '_mm_set1_epi16' was not declared in this scope > vgap_extend = _mm_set1_epi16 (-_parameters->extendGapCost); > ^ > /<<BUILDDIR>>/plast-2.3.1+dfsg/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:312:5: > error: 'vgap_open' was not declared in this scope > vgap_open = _mm_set1_epi16 (-_parameters->openGapCost); > ^~~~~~~~~ > /<<BUILDDIR>>/plast-2.3.1+dfsg/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:315:5: > error: 'vgap_open_extend' was not declared in this scope > vgap_open_extend = _mm_set1_epi16 (-(_parameters->openGapCost + > _parameters->extendGapCost)); > ^~~~~~~~~~~~~~~~ > /<<BUILDDIR>>/plast-2.3.1+dfsg/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:318:5: > error: 'vscore_min' was not declared in this scope > vscore_min = _mm_set1_epi16 (-100); > ^~~~~~~~~~ > /<<BUILDDIR>>/plast-2.3.1+dfsg/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:330:9: > error: 'vbest_arr' was not declared in this scope > vbest_arr[0] = _mm_set1_epi16(0); > ^~~~~~~~~ > /<<BUILDDIR>>/plast-2.3.1+dfsg/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:333:26: > error: 'vscore' was not declared in this scope > _mm_store_si128(&vscore, vgap_open_extend); > ^~~~~~ > /<<BUILDDIR>>/plast-2.3.1+dfsg/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:333:50: > error: '_mm_store_si128' was not declared in this scope > _mm_store_si128(&vscore, vgap_open_extend); > ^ > /<<BUILDDIR>>/plast-2.3.1+dfsg/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:336:26: > error: 'vbest_gap_arr' was not declared in this scope > _mm_store_si128 (vbest_gap_arr, vgap_open_extend); > ^~~~~~~~~~~~~ > /<<BUILDDIR>>/plast-2.3.1+dfsg/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:344:13: > error: 'vtemp' was not declared in this scope > vtemp = _mm_adds_epi16 (vscore, vgap_open_extend); > ^~~~~ > /<<BUILDDIR>>/plast-2.3.1+dfsg/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:344:61: > error: '_mm_adds_epi16' was not declared in this scope > vtemp = _mm_adds_epi16 (vscore, vgap_open_extend); > ^ > /<<BUILDDIR>>/plast-2.3.1+dfsg/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:352:9: > error: 'vbest_score' was not declared in this scope > vbest_score = _mm_set1_epi16(0); > ^~~~~~~~~~~ > /<<BUILDDIR>>/plast-2.3.1+dfsg/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:363:31: > error: 'vscore_gap_row' was not declared in this scope > _mm_store_si128 (&vscore_gap_row, vscore_min); > ^~~~~~~~~~~~~~ > /<<BUILDDIR>>/plast-2.3.1+dfsg/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:371:35: > error: 'vscore_gap_col' was not declared in this scope > _mm_store_si128 (&vscore_gap_col, *(vbest_gap_arr+j)); > ^~~~~~~~~~~~~~ > /<<BUILDDIR>>/plast-2.3.1+dfsg/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:389:17: > error: 'vtemp' was not declared in this scope > vtemp = _mm_set_epi16 ( > ^~~~~ > /<<BUILDDIR>>/plast-2.3.1+dfsg/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:392:17: > error: '_mm_set_epi16' was not declared in this scope > ); > ^ > /<<BUILDDIR>>/plast-2.3.1+dfsg/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:395:61: > error: '_mm_adds_epi16' was not declared in this scope > vtemp = _mm_adds_epi16 (vtemp,*(vbest_arr+j)); > ^ > /<<BUILDDIR>>/plast-2.3.1+dfsg/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:396:35: > error: 'vnext_score' was not declared in this scope > _mm_store_si128 (&vnext_score,vtemp); > ^~~~~~~~~~~ > /<<BUILDDIR>>/plast-2.3.1+dfsg/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:400:63: > error: '_mm_max_epi16' was not declared in this scope > vscore = _mm_max_epi16 (vscore, vscore_gap_col); > ^ > /<<BUILDDIR>>/plast-2.3.1+dfsg/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:419:17: > error: 'vtemp1' was not declared in this scope > vtemp1 = _mm_max_epi16 (vtemp, vscore_gap_col); > ^~~~~~ > /<<BUILDDIR>>/plast-2.3.1+dfsg/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:441:17: > error: 'vtemp' was not declared in this scope > vtemp = _mm_adds_epi16 (vscore_gap_row, vgap_open_extend); > ^~~~~ > /<<BUILDDIR>>/plast-2.3.1+dfsg/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:441:73: > error: '_mm_adds_epi16' was not declared in this scope > vtemp = _mm_adds_epi16 (vscore_gap_row, vgap_open_extend); > ^ > /<<BUILDDIR>>/plast-2.3.1+dfsg/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:450:54: > error: '_mm_extract_epi16' was not declared in this scope > scores[0] = _mm_extract_epi16 (vbest_score,0); > ^ > CMakeFiles/PlastLibrary.dir/build.make:425: recipe for target > 'CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp.o' > failed > make[3]: *** > [CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp.o] > Error 1 The full build log is available from: http://aws-logs.debian.net/2017/04/18/plast_2.3.1+dfsg-4_testing-i386.log A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! About the archive rebuild: The rebuild was done on EC2 VM instances from Amazon Web Services, using a clean, minimal and up-to-date chroot. Every failed build was retried once to eliminate random failures.
