Package: dazzdb
Version: 1.0+20160930-1
Severity: normal
Tags: patch
User: [email protected]
Usertags: origin-ubuntu zesty ubuntu-patch
Dear Maintainer,
dazzdb 1.0+20160930-1 fails to build in Ubuntu because the compiler-flags.patch
adds libraries
to the linker options (LDFLAGS) instead of where library flags should be
placed, at the end
(in LDLIBS).
In Ubuntu, the attached patch was applied to achieve the following:
* debian/patches/compiler-flags.patch: Update to use LDLIBS instead of
LDFLAGS, fixing FTBFS with ld --as-needed.
Thanks for considering the patch.
Logan Rosen
-- System Information:
Debian Release: stretch/sid
APT prefers yakkety-updates
APT policy: (500, 'yakkety-updates'), (500, 'yakkety-security'), (500,
'yakkety'), (100, 'yakkety-backports')
Architecture: amd64 (x86_64)
Foreign Architectures: i386
Kernel: Linux 4.4.0-21-generic (SMP w/2 CPU cores)
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8) (ignored: LC_ALL
set to en_US.utf8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
diff -Nru dazzdb-1.0+20160930/debian/patches/compiler-flags.patch dazzdb-1.0+20160930/debian/patches/compiler-flags.patch
--- dazzdb-1.0+20160930/debian/patches/compiler-flags.patch 2016-10-12 04:35:47.000000000 -0400
+++ dazzdb-1.0+20160930/debian/patches/compiler-flags.patch 2016-12-27 00:49:32.000000000 -0500
@@ -2,13 +2,13 @@
Author: Afif Elghraoui <[email protected]>
Forwarded: no
Last-Update: 2015-09-13
---- dazzdb.orig/Makefile
-+++ dazzdb/Makefile
+--- a/Makefile
++++ b/Makefile
@@ -1,6 +1,7 @@
DEST_DIR = ~/bin
CFLAGS += -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing
-+LDFLAGS += -lm
++LDLIBS += -lm
ALL = fasta2DB DB2fasta quiva2DB DB2quiva DBsplit DBdust Catrack DBshow DBstats DBrm simulator \
fasta2DAM DAM2fasta DBdump rangen
diff -Nru dazzdb-1.0+20160930/debian/patches/rename-simulator.patch dazzdb-1.0+20160930/debian/patches/rename-simulator.patch
--- dazzdb-1.0+20160930/debian/patches/rename-simulator.patch 2016-10-12 04:35:47.000000000 -0400
+++ dazzdb-1.0+20160930/debian/patches/rename-simulator.patch 2016-12-27 00:49:42.000000000 -0500
@@ -7,7 +7,7 @@
+++ dazzdb/Makefile
@@ -3,7 +3,7 @@
CFLAGS += -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing
- LDFLAGS += -lm
+ LDLIBS += -lm
-ALL = fasta2DB DB2fasta quiva2DB DB2quiva DBsplit DBdust Catrack DBshow DBstats DBrm simulator \
+ALL = fasta2DB DB2fasta quiva2DB DB2quiva DBsplit DBdust Catrack DBshow DBstats DBrm dsimulator \
