Subject: cdo in debian testing: Headers are 1.10.0 but library is 1.8.16 Package: cdo Version: 1.7.2+dfsg.1-1+b1 Severity: important
Dear Maintainer, I found the following problem in Debian Testing (I check that I have the last version with apt-get) The cdo in Debian Testing (in particular I tested cdo remapbil) produces: ------------------------------------------------------------------------------- The HDF5 header files used to compile this application do not match the version used by the HDF5 library to which this application is linked. Data corruption or segmentation faults may occur if the application continues. This can happen when an application was compiled by one version of HDF5 but linked with a different version of static or shared HDF5 library. You should recompile the application or check your shared library related settings such as 'LD_LIBRARY_PATH'. 'HDF5_DISABLE_VERSION_CHECK' environment variable is set to 1, application will continue at your own risk. Headers are 1.10.0, library is 1.8.16 ------------------------------------------------------------------------------- After, > export HDF5_DISABLE_VERSION_CHECK=1 the cdo library produces a "segmentation fault" and apparently it is not possible to use it. After checking the web-page: https://support.hdfgroup.org/HDF5/doc/ADGuide/Compatibility_Report/CR_1.10.0.html it seems to be that HDF5 libraries 1.10.0 and 1.8.16 are not full compatible. Maybe a solution will be compile the package with the new HDF5 libraries 1.10.0 already included in Debian Testing. Thanks, Ramiro, -- System Information: Debian Release: stretch/sid APT prefers testing APT policy: (500, 'testing') Architecture: amd64 (x86_64) Kernel: Linux 4.7.0-1-amd64 (SMP w/4 CPU cores) Locale: LANG=en_GB.UTF-8, LC_CTYPE=en_GB.UTF-8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/dash Init: systemd (via /run/systemd/system) Versions of packages cdo depends on: ii libc6 2.24-7 ii libcdi0 1.7.2+dfsg.1-1+b1 ii libcurl3-gnutls 7.50.1-1 ii libfftw3-double3 3.3.5-1 ii libgomp1 6.2.1-5 ii libhdf5-10 1.8.16+docs-8+b1 ii libmagplus3v5 2.29.6-2 ii libnetcdf11 1:4.4.1.1-1+b1 ii libproj12 4.9.3-1 ii libudunits2-0 2.2.20-1 cdo recommends no packages. cdo suggests no packages. -- no debconf information
