Package: libopenmpi2 Severity: important Version: 2.0.1-5 Hi,
if I run a program linked to OpenMPI's libmpi under fakeroot, it crashes: |(unstable-amd64-sbuild)mba@hartree:/$ OMPI_MCA_orte_rsh_agent=/bin/false |pw.x | | Program PWSCF v.5.4.0 starts on 1Oct2016 at 10:29:47 | | This program is part of the open-source Quantum ESPRESSO suite | for quantum simulation of materials; please cite | "P. Giannozzi et al., J. Phys.:Condens. Matter 21 395502 |(2009); | URL http://www.quantum-espresso.org";, | in publications or presentations arising from this work. More |details at | http://www.quantum-espresso.org/quote | | Parallel version (MPI), running on 1 processors |Open_input_file: error opening input_tmp.in | | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% | Error in routine read_input (2): | opening input file | %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% | | stopping ... |At line 97 of file error_handler.f90 (unit = 99) |Fortran runtime error: Cannot open file 'CRASH': Permission denied | |Error termination. Backtrace: |#0 0x7f4082814d4a |#1 0x7f4082815825 |#2 0x7f4082815f79 |#3 0x7f40828d5e4a |#4 0x7f40828d608d |#5 0x657c0a |#6 0x6adf9a |#7 0x407cfd |#8 0x7f4081b042b0 |#9 0x407d59 |#10 0xffffffffffffffff |(unstable-amd64-sbuild)mba@hartree:/$ OMPI_MCA_orte_rsh_agent=/bin/false |fakeroot pw.x |[hartree:10002] PMIX ERROR: INVALID-CREDENTIAL in file |src/server/pmix_server_listener.c at line 540 |[hartree:10001] PMIX ERROR: UNREACHABLE in file src/client/pmix_client.c |at line 983 |[hartree:10001] PMIX ERROR: UNREACHABLE in file src/client/pmix_client.c |at line 199 |-------------------------------------------------------------------------- |It looks like orte_init failed for some reason; your parallel process is |likely to abort. There are many reasons that a parallel process can |fail during orte_init; some of which are due to configuration or |environment problems. This failure appears to be an internal failure; |here's some additional information (which may only be relevant to an |Open MPI developer): | | init pmix failed | --> Returned value Unreachable (-12) instead of ORTE_SUCCESS |-------------------------------------------------------------------------- |-------------------------------------------------------------------------- |It looks like orte_init failed for some reason; your parallel process is |likely to abort. There are many reasons that a parallel process can |fail during orte_init; some of which are due to configuration or |environment problems. This failure appears to be an internal failure; |here's some additional information (which may only be relevant to an |Open MPI developer): | | orte_ess_init failed | --> Returned value Unreachable (-12) instead of ORTE_SUCCESS |-------------------------------------------------------------------------- |-------------------------------------------------------------------------- |It looks like MPI_INIT failed for some reason; your parallel process is |likely to abort. There are many reasons that a parallel process can |fail during MPI_INIT; some of which are due to configuration or |environment |problems. This failure appears to be an internal failure; here's some |additional information (which may only be relevant to an Open MPI |developer): | | ompi_mpi_init: ompi_rte_init failed | --> Returned "Unreachable" (-12) instead of "Success" (0) |-------------------------------------------------------------------------- |*** An error occurred in MPI_Init |*** on a NULL communicator |*** MPI_ERRORS_ARE_FATAL (processes in this communicator will now abort, |*** and potentially your MPI job) |[hartree:10001] Local abort before MPI_INIT completed completed |successfully, but am not able to aggregate error messages, and not able |to guarantee that all other processes were killed! |(unstable-amd64-sbuild)mba@hartree:/$ libfakeroot, when sending message: |Invalid argument |libfakeroot, when sending message: Invalid argument |libfakeroot, when sending message: Invalid argument |semop(1): encountered an error: Invalid argument pw.x (from quantum-espresso) is linked to the fortran MPI library as well, not sure if that matters: |(unstable-amd64-sbuild)mba@hartree:/$ ldd /usr/bin/pw.x | grep mpi | libscalapack-openmpi.so.1 => /usr//lib/libscalapack-openmpi.so.1 (0x00007fded925f000) | libblacs-openmpi.so.1 => /usr//lib/libblacs-openmpi.so.1 (0x00007fded902a000) | libblacsF77init-openmpi.so.1 => /usr//lib/libblacsF77init-openmpi.so.1 (0x00007fded8e28000) | libmpi_usempif08.so.20 => /usr//lib/libmpi_usempif08.so.20 (0x00007fded7d85000) | libmpi_usempi_ignore_tkr.so.20 => /usr//lib/libmpi_usempi_ignore_tkr.so.20 (0x00007fded7b7f000) | libmpi_mpifh.so.20 => /usr//lib/libmpi_mpifh.so.20 (0x00007fded7928000) | libmpi.so.20 => /usr//lib/libmpi.so.20 (0x00007fded7636000) | libblacsCinit-openmpi.so.1 => /usr//lib/libblacsCinit-openmpi.so.1 (0x00007fded6073000) Michael
