reassign 837062 libopenmpi-dev 2.0.1-3
retitle 837062 pkgincludedir undefined in openmpi pkgconfig files
affects 837062 scalapack
thanks
On Thu, 08 Sep 2016 14:12:59 +0200 Bas Couwenberg <sebas...@xs4all.nl>
wrote:
...
> /usr/lib/gcc/x86_64-linux-gnu/6/../../../../lib/libblacs-openmpi.so:
undefined reference to `MPI_Barrier'
> /usr/lib/gcc/x86_64-linux-gnu/6/../../../../lib/libblacs-openmpi.so:
undefined reference to `MPI_Waitall'
...
There might be a clue in your build log. It shows
gcc -shared -Wl,-soname=lib$i-openmpi.so.1 -o \
lib$i-openmpi.so.1.8.0 tmp/*.o -lblas -llapack -lblacsCinit-openmpi
-lblacs-openmpi -lgfortran -lm;\
ln -snf lib$i-openmpi.so.1.8.0 lib$i-openmpi.so.1 ;\
where debian/rules has
gcc -shared -Wl,-soname=lib$$i-openmpi.so.$(version_major) -o \
lib$$i-openmpi.so.$(version) tmp/*.o -lblas -llapack
-lblacsCinit-openmpi -lblacs-openmpi $(shell pkg-config mpi-fort --libs)
-lgfortran -lm;\
ln -snf lib$$i-openmpi.so.$(version)
lib$$i-openmpi.so.$(version_major) ;\
So it looks like $(shell pkg-config mpi-fort --libs) is returning
nothing, which would explain the undefined references in your log.
Indeed for openmpi 1.10, pkg-config mpi-fort --libs returns -lmpi and
friends.
For openmpi 2, it returns
Variable 'pkgincludedir' not defined in '/usr/lib/pkgconfig/mpi-fort.pc'
And indeed it is not defined. In openmpi 1.10,
/usr/lib/pkgconfig/ompi-fort.pc contains
Cflags: -I${libdir} -I${includedir}
-I${includedir}/openmpi/opal/mca/event/libevent2021/libevent
-I${includedir}/openmpi/opal/mca/event/libevent2021/libevent/include -pthread
In openmpi 2, the line is
Cflags: -I${includedir} -I${includedir}/openmpi -I/usr//include
-I${pkgincludedir}/opal/mca/event/libevent2022/libevent
-I${pkgincludedir}/openmpi/opal/mca/event/libevent2022/libevent/include
-pthread -I{libdir}
Looks like this bug should be reassigned to openmpi.
The openmpi pkgconfig files need to be patched.
