Source: python-cobra Version: 0.4.1-2 Severity: important Hi,
python-cobra FTBFS on hurd-i386, but the previous version built there: https://buildd.debian.org/status/fetch.php?pkg=python-cobra&arch=hurd-i386&ver=0.4.1-2&stamp=1464980277 test_double_gene_deletion (cobra.test.flux_analysis.TestCobraFluxAnalysis) ... ERROR Exception AttributeError: "'CobraDeletionPool' object has no attribute 'processes'" in <bound method CobraDeletionPool.__del__ of <cobra.flux_analysis.deletion_worker.CobraDeletionPool object at 0x530628c>> ignored ====================================================================== ERROR: test_double_gene_deletion (cobra.test.flux_analysis.TestCobraFluxAnalysis) ---------------------------------------------------------------------- Traceback (most recent call last): File "/«PKGBUILDDIR»/cobra/test/flux_analysis.py", line 170, in test_double_gene_deletion solution = double_gene_deletion(cobra_model, gene_list1=genes) File "/«PKGBUILDDIR»/cobra/flux_analysis/double_deletion.py", line 283, in double_gene_deletion gene_id_to_result, **kwargs) File "/«PKGBUILDDIR»/cobra/flux_analysis/double_deletion.py", line 403, in _double_gene_deletion_fba solver=solver, **kwargs) as pool: File "/«PKGBUILDDIR»/cobra/flux_analysis/deletion_worker.py", line 66, in __init__ self.job_queue = Queue() # format is (indexes, job_label) File "/usr/lib/python2.7/multiprocessing/__init__.py", line 217, in Queue from multiprocessing.queues import Queue File "/usr/lib/python2.7/multiprocessing/queues.py", line 48, in <module> from .synchronize import Lock, BoundedSemaphore, Semaphore, Condition File "/usr/lib/python2.7/multiprocessing/synchronize.py", line 59, in <module> " function, see issue 3770.") ImportError: This platform lacks a functioning sem_open implementation, therefore, the required synchronization primitives needed will not function, see issue 3770. ---------------------------------------------------------------------- Ran 129 tests in 6.040s FAILED (errors=1, skipped=11) If this is not trivially fixable, please request decrufting of the outdated binary packages: Control: reassign -1 ftp.debian.org Control: severity -1 normal Control: retitle -1 RM: python-cobra [hurd-i386] -- RoM; FTBFS; platform lacks a functioning sem_open implementation Andreas
