Source: python-pysam Version: 0.8.4+ds-1 Severity: serious Justification: fails to build from source User: [email protected] Usertags: ftbfs X-Debbugs-Cc: [email protected]
Dear Maintainer,
python-pysam fails to build from source in unstable/amd64:
[..]
samtools index softclip.bam
samtools index tag_bug.bam
samtools index ex10.bam
samtools index example_empty_header.bam
samtools index test_unaligned.bam
samtools index ex9_fail.bam
samtools index issue100.bam
samtools index ex5.bam
samtools index ex6.bam
samtools index rg_with_tab.bam
samtools index ex9_nofail.bam
samtools index example_btag.bam
samtools index example_unmapped_reads_no_sq.bam
samtools index ex4.bam
samtools index example_user_header.bam
samtools index ex8.bam
samtools index ex3.bam
samtools view -bC -T ex1.fa ex1.sam > ex1.cram
samtools view -bC -T ex1.fa ex2.sam > ex2.cram
samtools view -bC -T ex1.fa ex3.sam > ex3.cram
samtools index ex1.cram
samtools index ex2.cram
samtools index ex3.cram
cp ex1.bam example_bai.bam
samtools index example_bai.bam
mv example_bai.bam.bai example_bai.bai
head -c 124000 ex2.bam > ex2_truncated.bam
samtools index ex2_truncated.bam
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated.
samtools index: "ex2_truncated.bam" is corrupted or unsorted
Makefile:48: recipe for target 'ex2_truncated.bam.bai' failed
make[2]: *** [ex2_truncated.bam.bai] Error 1
make[2]: Leaving directory
'/home/lamby/temp/cdt.20160215090723.RznKM9ufGc/python-pysam-0.8.4+ds/tests/pysam_data'
debian/rules:26: recipe for target 'override_dh_auto_test' failed
make[1]: *** [override_dh_auto_test] Error 2
make[1]: Leaving directory
'/home/lamby/temp/cdt.20160215090723.RznKM9ufGc/python-pysam-0.8.4+ds'
debian/rules:20: recipe for target 'build' failed
make: *** [build] Error 2
[..]
The full build log is attached.
Regards,
--
,''`.
: :' : Chris Lamb
`. `'` [email protected] / chris-lamb.co.uk
`-
python-pysam.0.8.4+ds-1.unstable.amd64.log.txt.gz
Description: Binary data
