Package: libfreecontact-perl Version: 0.08-4 Severity: serious Usertags: goto-cc
During a rebuild of all Debian packages in a clean sid chroot (using cowbuilder
and pbuilder) the build failed with the following error.
[...]
make[1]: Leaving directory
'/srv/jenkins-slave/workspace/sid-goto-cc-libfreecontact-perl/libfreecontact-perl-0.08'
dh_auto_test -O--parallel
make -j1 test TEST_VERBOSE=1
make[1]: Entering directory
'/srv/jenkins-slave/workspace/sid-goto-cc-libfreecontact-perl/libfreecontact-perl-0.08'
Running Mkbootstrap for FreeContact ()
chmod 644 "FreeContact.bs"
PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness"
"-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')"
t/*.t
t/01FreeContact.t ..
1..3
ok 1 - use FreeContact;
ok 2 - FreeContact->can(...)
ok 3 - FreeContact::Predictor->can(...)
ok
will use 1 OMP threads
SSE2 veczweight, wchunk = 32
total weight (variation) of alignment = 620.777515304633
seq weight loop for 1000 seqs took 0.012224 secs
will use 1 OMP threads
calculated column aa frequencies, gap cols = 4
calculated pair frequency table in 0.192089 secs
collected apc_mean[MI] = 0.174031486973761
aa freq sum (cell) = 0.999997158936352, pairfreq sum (cell) = 0.999994420985606
formed covariance matrix (122/126,4)
LU factorization took 9.17976 secs, inverted matrix (incl LUf) in 23.7932 secs
density of inverse covariance matrix = 1 (cksum 346842.2)
went back to gapped (126) wwi matrix
collected apc_mean[l1norm] = 117.987054769839
collected apc_mean[fro] = 3.35437751555787
all done in 24.6311 secs
will use 1 OMP threads
SSE2 veczweight, wchunk = 32
total weight (variation) of alignment = 561.595172234625
t/02test.t .........
1..10
ok 1 - use FreeContact;
ok 2 - An object of class 'FreeContact::Predictor' isa 'FreeContact::Predictor'
ok 3
ok 4
ok 5 - precision test
ok 6 - timing results test
Failed 4/10 subtests
Test Summary Report
-------------------
t/02test.t (Wstat: 11 Tests: 6 Failed: 0)
Non-zero wait status: 11
Parse errors: Bad plan. You planned 10 tests but ran 6.
Files=2, Tests=9, 25 wallclock secs ( 0.06 usr 0.00 sys + 24.63 cusr 0.22
csys = 24.91 CPU)
Result: FAIL
Failed 1/2 test programs. 0/9 subtests failed.
Makefile:995: recipe for target 'test_dynamic' failed
make[1]: *** [test_dynamic] Error 255
make[1]: Leaving directory
'/srv/jenkins-slave/workspace/sid-goto-cc-libfreecontact-perl/libfreecontact-perl-0.08'
dh_auto_test: make -j1 test TEST_VERBOSE=1 returned exit code 2
debian/rules:8: recipe for target 'build' failed
make: *** [build] Error 2
dpkg-buildpackage: error: debian/rules build gave error exit status 2
I: Copying back the cached apt archive contents
I: new cache content libextutils-xspp-perl_0.1800-2_all.deb added
I: new cache content libfreecontact-dev_1.0.21-4_amd64.deb added
I: new cache content libfreecontact0v5_1.0.21-4_amd64.deb added
I: unmounting /srv/jenkins-slave/workspace/sid-goto-cc-libfreecontact-perl
filesystem
I: unmounting /run/shm filesystem
I: unmounting dev/pts filesystem
I: unmounting run/shm filesystem
I: unmounting proc filesystem
-> Cleaning COW directory
forking: rm -rf /srv/jenkins-slave/cow/cow.42349
The full build log is attached; please do let me know if the problem is
unreproducible, in which case I shall try to investigate further.
Best,
Michael
libfreecontact-perl-build-log.txt.gz
Description: application/gunzip
signature.asc
Description: PGP signature
