Package: bedtools Version: 2.25.0-1 Severity: normal User: [email protected] Usertags: ftbfs-gcc-6
This package fails to build with GCC 6. GCC 6 has not been released yet, but it's expected that GCC 6 will become the default compiler for stretch. You can find a snapshot of GCC 6 in experimental. To build with GCC 6, you can set CC=gcc-6 CXX=g++-6 explicitly. You may be able to find out more about this issue at https://gcc.gnu.org/gcc-6/changes.html > sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on dl580gen9-02.hlinux ... > - Building in src/utils/bedFile > * compiling bedFile.cpp > In file included from bedFile.cpp:12:0: > bedFile.h: In member function 'bool BedFile::parseVcfLine(T&, const > std::vector<std::__cxx11::basic_string<char> >&)': > bedFile.h:799:47: error: parse error in template argument list > else if ( (bed.start < 0) || (bed.end < 0) ) { > ^~~~~~~ > > bedFile.h: In member function 'bool BedFile::parseGffLine(T&, const > std::vector<std::__cxx11::basic_string<char> >&)': > bedFile.h:877:42: error: parse error in template argument list > if ( (bed.start < 0) || (bed.end < 0) ) { > ^~~~~~~ > > bedFile.h: In instantiation of 'bool BedFile::parseVcfLine(T&, const > std::vector<std::__cxx11::basic_string<char> >&) [with T = BED]': > bedFile.h:567:55: required from 'BedLineStatus BedFile::parseLine(T&, const > std::vector<std::__cxx11::basic_string<char> >&) [with T = BED]' > bedFile.cpp:233:44: required from here > bedFile.h:799:47: error: 'end' is not a member template function > else if ( (bed.start < 0) || (bed.end < 0) ) { > ~~~~~^~~~~~~~ > > bedFile.h: In instantiation of 'bool BedFile::parseGffLine(T&, const > std::vector<std::__cxx11::basic_string<char> >&) [with T = BED]': > bedFile.h:572:55: required from 'BedLineStatus BedFile::parseLine(T&, const > std::vector<std::__cxx11::basic_string<char> >&) [with T = BED]' > bedFile.cpp:233:44: required from here > bedFile.h:877:42: error: 'end' is not a member template function > if ( (bed.start < 0) || (bed.end < 0) ) { > ~~~~~^~~~~~~~ > > Makefile:22: recipe for target '../../../obj//bedFile.o' failed > make[2]: *** [../../../obj//bedFile.o] Error 1 -- Martin Michlmayr Linux for HPE Helion, Hewlett Packard Enterprise
