Package: src:ncbi-blast+ Version: 2.2.31-2 User: [email protected] Usertags: binary-indep Severity: important
Dear maintainer: I tried to build this package with "dpkg-buildpackage -A" (i.e. only architecture-independent packages), and it failed: -------------------------------------------------------------------------------- [...] debian/rules build-indep dh build-indep -Dc++ --with autotools_dev --with quilt dh_testdir -i -O-Dc\+\+ dh_autotools-dev_updateconfig -i -O-Dc\+\+ dh_quilt_patch -i -O-Dc\+\+ Applying patch enable_clean_after_failed_compile patching file c++/src/build-system/new_module.sh.in Applying patch legacy_rename_rpsblast patching file c++/src/app/blast/legacy_blast.pl Applying patch fix_lib_deps [... snipped ...] Done. /build/ncbi-blast+-jlDlzM/ncbi-blast+-2.2.31/c++/BUILD/build/check.sh: 1: /build/ncbi-blast+-jlDlzM/ncbi-blast+-2.2.31/c++/BUILD/build/check.sh: uptime: not found OK -- [serial/datatool] datatool.sh (real 0.38, user 0.20, sys 0.01) /build/ncbi-blast+-jlDlzM/ncbi-blast+-2.2.31/c++/BUILD/build/check.sh: 1: /build/ncbi-blast+-jlDlzM/ncbi-blast+-2.2.31/c++/BUILD/build/check.sh: uptime: not found SKP -- [serial/datatool] datatool_xml.sh /build/ncbi-blast+-jlDlzM/ncbi-blast+-2.2.31/c++/BUILD/build/check.sh: 1: /build/ncbi-blast+-jlDlzM/ncbi-blast+-2.2.31/c++/BUILD/build/check.sh: uptime: not found OK -- [objtools/blast/gene_info_reader/unit_test] gene_info_unit_test (real 0.02, user 0.00, sys 0.00) /build/ncbi-blast+-jlDlzM/ncbi-blast+-2.2.31/c++/BUILD/build/check.sh: 1: /build/ncbi-blast+-jlDlzM/ncbi-blast+-2.2.31/c++/BUILD/build/check.sh: uptime: not found OK -- [algo/blast/unit_tests/api] blastdiag_unit_test (real 0.02, user 0.00, sys 0.00) /build/ncbi-blast+-jlDlzM/ncbi-blast+-2.2.31/c++/BUILD/build/check.sh: 1: /build/ncbi-blast+-jlDlzM/ncbi-blast+-2.2.31/c++/BUILD/build/check.sh: uptime: not found OK -- [algo/blast/unit_tests/api] aascan_unit_test (real 1.92, user 0.52, sys 0.03) Succeeded : 4 Timeout : 0 Failed : 0 Absent : 1 ******** ALL TESTS COMPLETED SUCCESSFULLY ******** make[3]: Leaving directory '/build/ncbi-blast+-jlDlzM/ncbi-blast+-2.2.31/c++/BUILD/build' make[2]: Leaving directory '/build/ncbi-blast+-jlDlzM/ncbi-blast+-2.2.31/c++' c++/BUILD/build/check.sh concat_err cat c++/BUILD/build/check.sh.out_err make[1]: Leaving directory '/build/ncbi-blast+-jlDlzM/ncbi-blast+-2.2.31' fakeroot debian/rules binary-indep dh binary-indep -Dc++ --with autotools_dev --with quilt dh_testroot -i -O-Dc\+\+ dh_prep -i -O-Dc\+\+ dh_installdirs -i -O-Dc\+\+ debian/rules override_dh_auto_install make[1]: Entering directory '/build/ncbi-blast+-jlDlzM/ncbi-blast+-2.2.31' cp c++/BUILD/lib/*.so debian/ncbi-blast+/usr/lib/ncbi-blast+/ cp: target 'debian/ncbi-blast+/usr/lib/ncbi-blast+/' is not a directory debian/rules:63: recipe for target 'override_dh_auto_install' failed make[1]: *** [override_dh_auto_install] Error 1 make[1]: Leaving directory '/build/ncbi-blast+-jlDlzM/ncbi-blast+-2.2.31' debian/rules:104: recipe for target 'binary-indep' failed make: *** [binary-indep] Error 2 dpkg-buildpackage: error: fakeroot debian/rules binary-indep gave error exit status 2 -------------------------------------------------------------------------------- Sorry not to have a fix, as I am reporting many bugs similar to this one. The common hints are: * If the only architecture-independent packages are dummy transitional ones and they were released with jessie, the easy fix is to drop them now. * When using "dh", it is allowed to use (independently) optional targets override_dh_foo-arch and override_dh_foo-indep (for several values of "foo"). Once that both "dpkg-buildpackage -A" and "dpkg-buildpackage -B" work properly, the package would be suitable to be uploaded in source-only form if you wish. Thanks.
