Hi Staden developers,
as you can see in this Debian bug report the current staden release is
in conflict with the latest releases of staden-io-lib. Both dafine the
same function but with different code (not only the header is
different).
Any help is welcome
Andreas.
On Fri, Jul 24, 2015 at 07:14:29PM +0000, Chris West (Faux) wrote:
> Source: staden
> Version: 2.0.0+b10-1.1
> Severity: serious
> Tags: sid
> Justification: fails to build from source
> User: reproducible-bui...@lists.alioth.debian.org
> Usertags: ftbfs
>
> Dear Maintainer,
>
> The package fails to build:
>
> sam_index.c:321:14: error: conflicting types for ‘append_int’
> static char *append_int(char *cp, int i) {
> ^
> In file included from /usr/include/io_lib/scram.h:52:0,
> from sam_pileup.h:4,
> from sam_index.c:17:
> /usr/include/io_lib/bam.h:755:16: note: previous declaration of ‘append_int’
> was here
> unsigned char *append_int(unsigned char *cp, int32_t i);
> ^
> /staden-2.0.0+b10/./gap5/../global.mk:388: recipe for target 'sam_index.o'
> failed
> make[2]: *** [sam_index.o] Error 1
> make[2]: Leaving directory '/staden-2.0.0+b10/gap5'
>
>
> Full build log:
> https://reproducible.debian.net/rb-pkg/unstable/amd64/staden.html
>
> -- System Information:
> Debian Release: stretch/sid
> APT prefers unstable
> APT policy: (500, 'unstable')
> Architecture: amd64 (x86_64)
>
> Kernel: Linux 3.19.0-23-generic (SMP w/8 CPU cores)
> Locale: LANG=en_GB.UTF-8, LC_CTYPE=en_GB.UTF-8 (charmap=UTF-8)
> Shell: /bin/sh linked to /bin/dash
> Init: systemd (via /run/systemd/system)
>
> _______________________________________________
> Debian-med-packaging mailing list
> debian-med-packag...@lists.alioth.debian.org
> http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-packaging
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